Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBH entry

There are 4 chains in PDB entry 3GBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 212
B
 GLY 0LEU 212
C
 GLN 2LEU 212
D
 GLN 2LEU 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3GBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
30 42Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
69 73Right-handed 310
Helix 6
6
A
74 81Right-handed alpha
Helix 7
7
A
92 95Right-handed 310
Helix 8
8
A
96 107Right-handed alpha
Helix 9
9
A
111 128Right-handed alpha
Helix 10
10
A
130 156Right-handed alpha
Helix 11
11
A
170 176Right-handed alpha
Helix 12
12
A
204 207Right-handed 310
Helix 13
13
B
9 17Right-handed alpha
Helix 14
14
B
30 42Right-handed alpha
Helix 15
15
B
46 50Right-handed 310
Helix 16
16
B
60 68Right-handed alpha
Helix 17
17
B
69 73Right-handed 310
Helix 18
18
B
74 81Right-handed alpha
Helix 19
19
B
92 95Right-handed 310
Helix 20
20
B
96 107Right-handed alpha
Helix 21
21
B
111 128Right-handed alpha
Helix 22
22
B
130 156Right-handed alpha
Helix 23
23
B
170 176Right-handed alpha
Helix 24
24
B
204 207Right-handed 310
Helix 25
25
C
9 17Right-handed alpha
Helix 26
26
C
30 42Right-handed alpha
Helix 27
27
C
46 50Right-handed 310
Helix 28
28
C
60 68Right-handed alpha
Helix 29
29
C
69 73Right-handed 310
Helix 30
30
C
74 81Right-handed alpha
Helix 31
31
C
92 95Right-handed 310
Helix 32
32
C
96 107Right-handed alpha
Helix 33
33
C
111 128Right-handed alpha
Helix 34
34
C
130 156Right-handed alpha
Helix 35
35
C
170 176Right-handed alpha
Helix 36
36
C
204 207Right-handed 310
Helix 37
37
D
9 17Right-handed alpha
Helix 38
38
D
30 42Right-handed alpha
Helix 39
39
D
46 50Right-handed 310
Helix 40
40
D
60 68Right-handed alpha
Helix 41
41
D
69 73Right-handed 310
Helix 42
42
D
74 81Right-handed alpha
Helix 43
43
D
92 95Right-handed 310
Helix 44
44
D
96 107Right-handed alpha
Helix 45
45
D
111 128Right-handed alpha
Helix 46
46
D
130 156Right-handed alpha
Helix 47
47
D
170 176Right-handed alpha
Helix 48
48
D
204 207Right-handed 310
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There are 4 sheets in PDB entry 3GBH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
182 191anti-parallel
Strand 3
A
83 90anti-parallel
Strand 4
A
53 58anti-parallel
Strand 5
B
209 212parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
B
53 58parallel
Strand 3
B
83 90anti-parallel
Strand 4
B
182 191anti-parallel
Strand 5
B
159 163anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 163first strand
Strand 2
C
182 191anti-parallel
Strand 3
C
83 90anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
D
209 212parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 211first strand
Strand 2
D
53 58parallel
Strand 3
D
83 90anti-parallel
Strand 4
D
182 191anti-parallel
Strand 5
D
159 163anti-parallel
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