Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBJ entry

There are 3 chains in PDB entry 3GBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LYS 351
B
 LYS 5LYS 351
C
 LYS 5LYS 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3GBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 23Right-handed alpha
Helix 2
2
A
75 93Right-handed alpha
Helix 3
3
A
108 114Right-handed alpha
Helix 4
4
A
121 138Right-handed alpha
Helix 5
5
A
193 207Right-handed alpha
Helix 6
6
A
271 293Right-handed alpha
Helix 7
7
A
304 307Right-handed 310
Helix 8
8
A
308 314Right-handed alpha
Helix 9
9
A
314 319Right-handed alpha
Helix 10
10
A
333 335Right-handed 310
Helix 11
11
A
336 351Right-handed alpha
Helix 12
12
B
16 22Right-handed alpha
Helix 13
13
B
75 93Right-handed alpha
Helix 14
14
B
108 114Right-handed alpha
Helix 15
15
B
121 138Right-handed alpha
Helix 16
16
B
193 208Right-handed alpha
Helix 17
17
B
273 291Right-handed alpha
Helix 18
18
B
304 307Right-handed 310
Helix 19
19
B
308 314Right-handed alpha
Helix 20
20
B
315 318Right-handed 310
Helix 21
21
B
333 335Right-handed 310
Helix 22
22
B
336 351Right-handed alpha
Helix 23
23
C
16 22Right-handed alpha
Helix 24
24
C
75 83Right-handed alpha
Helix 25
25
C
83 93Right-handed alpha
Helix 26
26
C
108 114Right-handed alpha
Helix 27
27
C
121 138Right-handed alpha
Helix 28
28
C
165 169Right-handed 310
Helix 29
29
C
193 208Right-handed alpha
Helix 30
30
C
218 222Right-handed 310
Helix 31
31
C
275 290Right-handed alpha
Helix 32
32
C
304 307Right-handed 310
Helix 33
33
C
308 314Right-handed alpha
Helix 34
34
C
314 319Right-handed alpha
Helix 35
35
C
333 335Right-handed 310
Helix 36
36
C
336 349Right-handed alpha
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There are 11 sheets in PDB entry 3GBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
6 12parallel
Strand 3
A
323 330parallel
Strand 4
A
97 103parallel
Strand 5
A
241 253parallel
Strand 6
A
223 235anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
157 160anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
6 12parallel
Strand 3
A
323 330parallel
Strand 4
A
97 103parallel
Strand 5
A
241 253parallel
Strand 6
A
223 235anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
189 191anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
54 57anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
6 12parallel
Strand 3
B
323 330parallel
Strand 4
B
97 103parallel
Strand 5
B
244 253parallel
Strand 6
B
223 234anti-parallel
Strand 7
B
142 154anti-parallel
Strand 8
B
157 160anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
6 12parallel
Strand 3
B
323 330parallel
Strand 4
B
97 103parallel
Strand 5
B
244 253parallel
Strand 6
B
223 234anti-parallel
Strand 7
B
142 154anti-parallel
Strand 8
B
189 191anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
54 57anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
182 183anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
6 12parallel
Strand 3
C
323 330parallel
Strand 4
C
97 103parallel
Strand 5
C
243 253parallel
Strand 6
C
223 234anti-parallel
Strand 7
C
143 154anti-parallel
Strand 8
C
157 160anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
6 12parallel
Strand 3
C
323 330parallel
Strand 4
C
97 103parallel
Strand 5
C
243 253parallel
Strand 6
C
223 234anti-parallel
Strand 7
C
143 154anti-parallel
Strand 8
C
189 190anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
34 37anti-parallel
Strand 3
C
54 57anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
180 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il