Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBP entry

There is 1 chain in PDB entry 3GBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3THR 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3GBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
HA
A
15 30Right-handed alpha
Helix 2
HB
A
45 57Right-handed alpha
Helix 3
HC
A
70 82Right-handed alpha
Helix 4
HD
A
96 100Right-handed alpha
Helix 5
HE
A
112 129Right-handed alpha
Helix 6
HF
A
131 133Right-handed 310
Helix 7
HG
A
153 168Right-handed alpha
Helix 8
HH
A
185 196Right-handed alpha
Helix 9
HI
A
201 203Right-handed 310
Helix 10
HJ
A
212 224Right-handed alpha
Helix 11
HK
A
239 247Right-handed alpha
Helix 12
HL
A
258 273Right-handed alpha
Helix 13
HM
A
303 306Right-handed 310
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There are 2 sheets in PDB entry 3GBP. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 7 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
4 9parallel
Strand 3
A
62 65parallel
Strand 4
A
87 90parallel
Strand 5
A
105 110parallel
Strand 6
A
289 293parallel
Strand 7
A
287 288anti-parallel
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There are 6 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 180first strand
Strand 2
A
141 147parallel
Strand 3
A
206 209parallel
Strand 4
A
232 235parallel
Strand 5
A
252 255parallel
Strand 6
A
296 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il