Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBR entry

There are 2 chains in PDB entry 3GBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 344
B
 ASN 2SER 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3GBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
17 30Right-handed alpha
Helix 3
3
A
34 49Right-handed alpha
Helix 4
4
A
51 66Right-handed alpha
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
117 126Right-handed alpha
Helix 7
7
A
132 144Right-handed alpha
Helix 8
8
A
150 154Right-handed alpha
Helix 9
9
A
155 159Right-handed 310
Helix 10
10
A
160 168Right-handed alpha
Helix 11
11
A
171 180Right-handed 310
Helix 12
12
A
194 207Right-handed alpha
Helix 13
13
A
249 252Right-handed 310
Helix 14
14
A
257 262Right-handed 310
Helix 15
15
A
265 279Right-handed alpha
Helix 16
16
A
281 299Right-handed alpha
Helix 17
17
A
304 317Right-handed alpha
Helix 18
18
A
318 330Right-handed alpha
Helix 19
19
A
332 344Right-handed alpha
Helix 20
20
B
2 12Right-handed alpha
Helix 21
21
B
17 30Right-handed alpha
Helix 22
22
B
34 49Right-handed alpha
Helix 23
23
B
51 65Right-handed alpha
Helix 24
24
B
89 100Right-handed alpha
Helix 25
25
B
117 126Right-handed alpha
Helix 26
26
B
132 144Right-handed alpha
Helix 27
27
B
150 154Right-handed alpha
Helix 28
28
B
155 159Right-handed 310
Helix 29
29
B
160 168Right-handed alpha
Helix 30
30
B
171 180Right-handed 310
Helix 31
31
B
194 196Right-handed 310
Helix 32
32
B
197 206Right-handed alpha
Helix 33
33
B
249 252Right-handed 310
Helix 34
34
B
257 261Right-handed 310
Helix 35
35
B
265 278Right-handed alpha
Helix 36
36
B
281 299Right-handed alpha
Helix 37
37
B
304 317Right-handed alpha
Helix 38
38
B
318 330Right-handed alpha
Helix 39
39
B
332 344Right-handed alpha
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There are 4 sheets in PDB entry 3GBR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
187 191parallel
Strand 3
A
212 218parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
240 247anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
145 149parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
187 191parallel
Strand 3
B
212 218parallel
Strand 4
B
230 237anti-parallel
Strand 5
B
240 247anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
145 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il