Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBU entry

There are 4 chains in PDB entry 3GBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 304
B
 LEU 3LEU 304
C
 LEU 3LEU 304
D
 LEU 3LEU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 3GBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 46Right-handed alpha
Helix 2
2
A
59 72Right-handed alpha
Helix 3
3
A
107 111Right-handed 310
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
118 125Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
139 152Right-handed alpha
Helix 8
8
A
164 169Right-handed 310
Helix 9
9
A
171 186Right-handed alpha
Helix 10
10
A
193 201Right-handed alpha
Helix 11
11
A
244 260Right-handed alpha
Helix 12
12
A
264 280Right-handed alpha
Helix 13
13
A
290 294Right-handed 310
Helix 14
14
A
297 304Right-handed alpha
Helix 15
15
B
34 46Right-handed alpha
Helix 16
16
B
59 72Right-handed alpha
Helix 17
17
B
107 111Right-handed 310
Helix 18
18
B
113 117Right-handed 310
Helix 19
19
B
118 124Right-handed alpha
Helix 20
20
B
133 137Right-handed 310
Helix 21
21
B
139 152Right-handed alpha
Helix 22
22
B
164 169Right-handed 310
Helix 23
23
B
171 186Right-handed alpha
Helix 24
24
B
193 201Right-handed alpha
Helix 25
25
B
244 260Right-handed alpha
Helix 26
26
B
264 280Right-handed alpha
Helix 27
27
B
290 295Right-handed alpha
Helix 28
28
B
297 302Right-handed alpha
Helix 29
29
C
34 46Right-handed alpha
Helix 30
30
C
59 72Right-handed alpha
Helix 31
31
C
107 111Right-handed 310
Helix 32
32
C
113 117Right-handed 310
Helix 33
33
C
118 125Right-handed alpha
Helix 34
34
C
132 137Right-handed 310
Helix 35
35
C
139 152Right-handed alpha
Helix 36
36
C
164 169Right-handed 310
Helix 37
37
C
171 186Right-handed alpha
Helix 38
38
C
193 202Right-handed alpha
Helix 39
39
C
244 260Right-handed alpha
Helix 40
40
C
264 279Right-handed alpha
Helix 41
41
C
297 304Right-handed alpha
Helix 42
42
D
34 46Right-handed alpha
Helix 43
43
D
59 72Right-handed alpha
Helix 44
44
D
107 111Right-handed 310
Helix 45
45
D
113 117Right-handed 310
Helix 46
46
D
118 125Right-handed alpha
Helix 47
47
D
132 137Right-handed 310
Helix 48
48
D
139 152Right-handed alpha
Helix 49
49
D
164 169Right-handed 310
Helix 50
50
D
171 184Right-handed alpha
Helix 51
51
D
193 201Right-handed alpha
Helix 52
52
D
244 260Right-handed alpha
Helix 53
53
D
264 280Right-handed alpha
Helix 54
54
D
290 295Right-handed alpha
Helix 55
55
D
297 304Right-handed alpha
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There are 6 sheets in PDB entry 3GBU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
50 57parallel
Strand 3
A
4 7parallel
Strand 4
A
127 131parallel
Strand 5
A
156 160parallel
Strand 6
A
188 192parallel
Strand 7
A
211 215parallel
Strand 8
A
220 225anti-parallel
Strand 9
A
228 233anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
11 16parallel
Strand 4
A
27 33anti-parallel
Strand 5
D
27 33anti-parallel
Strand 6
D
11 16anti-parallel
Strand 7
D
88 93parallel
Strand 8
D
100 104anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
50 57parallel
Strand 3
B
4 7parallel
Strand 4
B
127 131parallel
Strand 5
B
156 160parallel
Strand 6
B
188 192parallel
Strand 7
B
211 215parallel
Strand 8
B
220 225anti-parallel
Strand 9
B
228 233anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
88 93anti-parallel
Strand 3
B
11 16parallel
Strand 4
B
27 33anti-parallel
Strand 5
C
27 33anti-parallel
Strand 6
C
11 16anti-parallel
Strand 7
C
88 93parallel
Strand 8
C
100 103anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 82first strand
Strand 2
C
50 57parallel
Strand 3
C
4 7parallel
Strand 4
C
127 130parallel
Strand 5
C
156 160parallel
Strand 6
C
188 192parallel
Strand 7
C
211 216parallel
Strand 8
C
220 225anti-parallel
Strand 9
C
228 233anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 82first strand
Strand 2
D
50 57parallel
Strand 3
D
4 7parallel
Strand 4
D
127 130parallel
Strand 5
D
156 160parallel
Strand 6
D
188 192parallel
Strand 7
D
211 215parallel
Strand 8
D
220 225anti-parallel
Strand 9
D
228 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il