Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBV entry

There are 2 chains in PDB entry 3GBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 64HIS 352
B
 LYS 64HIS 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3GBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 95Right-handed alpha
Helix 2
2
A
96 98Right-handed 310
Helix 3
3
A
111 124Right-handed alpha
Helix 4
4
A
136 139Right-handed 310
Helix 5
5
A
140 151Right-handed alpha
Helix 6
6
A
173 189Right-handed alpha
Helix 7
7
A
208 226Right-handed alpha
Helix 8
8
A
243 255Right-handed alpha
Helix 9
9
A
268 278Right-handed alpha
Helix 10
10
A
291 300Right-handed alpha
Helix 11
11
A
310 327Right-handed alpha
Helix 12
12
A
347 351Right-handed 310
Helix 13
13
B
79 95Right-handed alpha
Helix 14
14
B
96 98Right-handed 310
Helix 15
15
B
111 126Right-handed alpha
Helix 16
16
B
136 151Right-handed alpha
Helix 17
17
B
173 189Right-handed alpha
Helix 18
18
B
208 226Right-handed alpha
Helix 19
19
B
243 255Right-handed alpha
Helix 20
20
B
268 278Right-handed alpha
Helix 21
21
B
291 300Right-handed alpha
Helix 22
22
B
310 327Right-handed alpha
Helix 23
23
B
347 351Right-handed 310
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There are 4 sheets in PDB entry 3GBV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
66 73parallel
Strand 3
A
129 132parallel
Strand 4
A
154 157parallel
Strand 5
A
168 171parallel
Strand 6
A
335 337parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 237first strand
Strand 2
A
194 201parallel
Strand 3
A
260 263parallel
Strand 4
A
284 288parallel
Strand 5
A
303 308parallel
Strand 6
A
341 343anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
66 73parallel
Strand 3
B
129 132parallel
Strand 4
B
154 157parallel
Strand 5
B
168 172parallel
Strand 6
B
335 338parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 237first strand
Strand 2
B
194 201parallel
Strand 3
B
260 263parallel
Strand 4
B
284 288parallel
Strand 5
B
303 308parallel
Strand 6
B
341 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il