Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBX entry

There are 2 chains in PDB entry 3GBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ALA 417
B
 SER -2ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
12 29Right-handed alpha
Helix 3
3
A
40 48Right-handed alpha
Helix 4
4
A
49 54Right-handed 310
Helix 5
5
A
71 87Right-handed alpha
Helix 6
6
A
97 110Right-handed alpha
Helix 7
7
A
135 140Right-handed alpha
Helix 8
8
A
154 166Right-handed alpha
Helix 9
9
A
182 193Right-handed alpha
Helix 10
10
A
204 210Right-handed alpha
Helix 11
11
A
228 232Right-handed 310
Helix 12
12
A
245 256Right-handed alpha
Helix 13
13
A
265 279Right-handed alpha
Helix 14
14
A
281 305Right-handed alpha
Helix 15
15
A
311 313Right-handed 310
Helix 16
16
A
324 327Right-handed 310
Helix 17
17
A
329 340Right-handed alpha
Helix 18
18
A
366 372Right-handed alpha
Helix 19
19
A
375 392Right-handed alpha
Helix 20
20
A
395 413Right-handed alpha
Helix 21
21
B
7 12Right-handed alpha
Helix 22
22
B
12 29Right-handed alpha
Helix 23
23
B
40 48Right-handed alpha
Helix 24
24
B
49 54Right-handed 310
Helix 25
25
B
72 87Right-handed alpha
Helix 26
26
B
97 110Right-handed alpha
Helix 27
27
B
154 166Right-handed alpha
Helix 28
28
B
182 193Right-handed alpha
Helix 29
29
B
204 210Right-handed alpha
Helix 30
30
B
245 256Right-handed alpha
Helix 31
31
B
265 280Right-handed alpha
Helix 32
32
B
281 305Right-handed alpha
Helix 33
33
B
311 313Right-handed 310
Helix 34
34
B
324 327Right-handed 310
Helix 35
35
B
329 339Right-handed alpha
Helix 36
36
B
366 372Right-handed alpha
Helix 37
37
B
375 392Right-handed alpha
Helix 38
38
B
395 413Right-handed alpha
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There are 6 sheets in PDB entry 3GBX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
342 343parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
169 172parallel
Strand 6
A
115 121parallel
Strand 7
A
141 147parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
345 347anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
342 343parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
237 241anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
169 172parallel
Strand 6
B
115 120parallel
Strand 7
B
141 146parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
318 322anti-parallel
Strand 3
B
361 365anti-parallel
Strand 4
B
345 347anti-parallel
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