Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBZ entry

There is 1 chain in PDB entry 3GBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11PRO 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3GBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
59 66Right-handed alpha
Helix 3
3
A
67 69Right-handed 310
Helix 4
4
A
98 105Right-handed alpha
Helix 5
5
A
109 130Right-handed alpha
Helix 6
6
A
138 140Right-handed 310
Helix 7
7
A
161 167Right-handed alpha
Helix 8
8
A
184 189Right-handed alpha
Helix 9
9
A
196 213Right-handed alpha
Helix 10
10
A
221 234Right-handed alpha
Helix 11
11
A
243 247Right-handed 310
Helix 12
12
A
261 267Right-handed alpha
Helix 13
13
A
268 270Right-handed 310
Helix 14
14
A
271 282Right-handed alpha
Helix 15
15
A
285 289Right-handed 310
Helix 16
16
A
291 297Right-handed alpha
Helix 17
17
A
298 302Right-handed 310
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There are 2 sheets in PDB entry 3GBZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 23first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
40 45anti-parallel
Strand 4
A
86 92anti-parallel
Strand 5
A
77 83anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
142 145anti-parallel
Strand 3
A
154 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il