Analysis of interatomic Contacts of Structural Units in PDB entry:
3GC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GC6 entry

There are 2 chains in PDB entry 3GC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 36ARG 277
B
 LEU 39LEU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3GC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 65Right-handed alpha
Helix 2
2
A
74 87Right-handed alpha
Helix 3
3
A
95 98Right-handed 310
Helix 4
4
A
99 106Right-handed alpha
Helix 5
5
A
121 133Right-handed alpha
Helix 6
6
A
136 139Right-handed 310
Helix 7
7
A
140 147Right-handed alpha
Helix 8
8
A
175 191Right-handed alpha
Helix 9
9
A
212 217Right-handed alpha
Helix 10
10
A
218 222Right-handed 310
Helix 11
11
A
246 259Right-handed alpha
Helix 12
12
A
271 276Right-handed alpha
Helix 13
13
B
50 65Right-handed alpha
Helix 14
14
B
74 87Right-handed alpha
Helix 15
15
B
95 98Right-handed 310
Helix 16
16
B
99 106Right-handed alpha
Helix 17
17
B
121 133Right-handed alpha
Helix 18
18
B
136 139Right-handed 310
Helix 19
19
B
140 147Right-handed alpha
Helix 20
20
B
175 191Right-handed alpha
Helix 21
21
B
212 217Right-handed alpha
Helix 22
22
B
218 222Right-handed 310
Helix 23
23
B
246 260Right-handed alpha
Helix 24
24
B
271 275Right-handed alpha
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There are 4 sheets in PDB entry 3GC6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
164 165anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
195 201parallel
Strand 3
A
227 234parallel
Strand 4
A
262 270parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
164 165anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
195 201parallel
Strand 3
B
227 234parallel
Strand 4
B
262 270parallel
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