Analysis of interatomic Contacts of Structural Units in PDB entry:
3GCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GCM entry

There are 6 chains in PDB entry 3GCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ARG 545
D
 GLY 1039PRO 1059
B
 MET 1PRO 544
E
 ALA 1040PRO 1059
C
 MET 1PRO 544
F
 GLY 1039PRO 1059
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3GCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 71Right-handed 310
Helix 2
2
A
85 100Right-handed alpha
Helix 3
3
A
101 103Right-handed 310
Helix 4
4
A
125 142Right-handed alpha
Helix 5
5
A
166 171Right-handed alpha
Helix 6
6
A
197 212Right-handed alpha
Helix 7
7
A
212 227Right-handed alpha
Helix 8
8
A
239 258Right-handed alpha
Helix 9
9
A
262 285Right-handed alpha
Helix 10
10
A
289 311Right-handed alpha
Helix 11
11
A
358 362Right-handed 310
Helix 12
12
A
383 388Right-handed 310
Helix 13
13
A
397 412Right-handed alpha
Helix 14
14
A
437 453Right-handed alpha
Helix 15
15
A
482 488Right-handed alpha
Helix 16
16
A
515 541Right-handed alpha
Helix 17
17
D
1042 1046Right-handed 310
Helix 18
18
B
67 70Right-handed 310
Helix 19
19
B
85 100Right-handed alpha
Helix 20
20
B
101 103Right-handed 310
Helix 21
21
B
125 142Right-handed alpha
Helix 22
22
B
169 173Right-handed 310
Helix 23
23
B
197 212Right-handed alpha
Helix 24
24
B
212 227Right-handed alpha
Helix 25
25
B
239 258Right-handed alpha
Helix 26
26
B
262 285Right-handed alpha
Helix 27
27
B
289 311Right-handed alpha
Helix 28
28
B
383 388Right-handed 310
Helix 29
29
B
397 410Right-handed alpha
Helix 30
30
B
411 415Right-handed 310
Helix 31
31
B
437 453Right-handed alpha
Helix 32
32
B
482 488Right-handed alpha
Helix 33
33
B
515 541Right-handed alpha
Helix 34
34
E
1042 1046Right-handed 310
Helix 35
35
C
67 70Right-handed 310
Helix 36
36
C
85 100Right-handed alpha
Helix 37
37
C
101 103Right-handed 310
Helix 38
38
C
125 142Right-handed alpha
Helix 39
39
C
168 173Right-handed 310
Helix 40
40
C
197 212Right-handed alpha
Helix 41
41
C
212 227Right-handed alpha
Helix 42
42
C
239 258Right-handed alpha
Helix 43
43
C
262 285Right-handed alpha
Helix 44
44
C
289 311Right-handed alpha
Helix 45
45
C
358 362Right-handed 310
Helix 46
46
C
383 388Right-handed 310
Helix 47
47
C
397 412Right-handed alpha
Helix 48
48
C
413 415Right-handed 310
Helix 49
49
C
437 453Right-handed alpha
Helix 50
50
C
482 488Right-handed alpha
Helix 51
51
C
515 541Right-handed alpha
Helix 52
52
F
1042 1046Right-handed 310
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There are 12 sheets in PDB entry 3GCM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
29 35anti-parallel
Strand 4
A
38 46anti-parallel
Strand 5
A
111 119anti-parallel
Strand 6
A
59 65parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
186 196anti-parallel
Strand 5
A
502 509anti-parallel
Strand 6
A
491 497anti-parallel
Strand 7
A
462 471anti-parallel
Strand 8
A
474 478anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 381first strand
Strand 2
A
424 433parallel
Strand 3
A
348 357anti-parallel
Strand 4
A
339 345anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
D
1048 1052anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
370 374anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
29 35anti-parallel
Strand 4
B
38 46anti-parallel
Strand 5
B
111 119anti-parallel
Strand 6
B
59 65parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
150 157anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
186 196anti-parallel
Strand 5
B
502 509anti-parallel
Strand 6
B
491 497anti-parallel
Strand 7
B
462 471anti-parallel
Strand 8
B
474 479anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 381first strand
Strand 2
B
424 433parallel
Strand 3
B
348 357anti-parallel
Strand 4
B
339 345anti-parallel
Strand 5
B
327 331anti-parallel
Strand 6
E
1048 1052anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
372 374anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 11first strand
Strand 2
C
14 20anti-parallel
Strand 3
C
29 35anti-parallel
Strand 4
C
38 46anti-parallel
Strand 5
C
111 119anti-parallel
Strand 6
C
59 65parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 163first strand
Strand 2
C
150 157anti-parallel
Strand 3
C
175 181anti-parallel
Strand 4
C
186 196anti-parallel
Strand 5
C
502 509anti-parallel
Strand 6
C
491 497anti-parallel
Strand 7
C
462 471anti-parallel
Strand 8
C
474 479anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 381first strand
Strand 2
C
424 433parallel
Strand 3
C
348 357anti-parallel
Strand 4
C
339 345anti-parallel
Strand 5
C
327 331anti-parallel
Strand 6
F
1048 1052anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
363 367first strand
Strand 2
C
370 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il