Analysis of interatomic Contacts of Structural Units in PDB entry:
3GCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GCW entry

There are 3 chains in PDB entry 3GCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 THR 61GLN 152
A
 SER 153ARG 682
E
 MET 292GLU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3GCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
69 71Right-handed 310
Helix 2
2
P
87 105Right-handed alpha
Helix 3
3
P
127 129Right-handed 310
Helix 4
4
P
130 136Right-handed alpha
Helix 5
5
A
155 161Right-handed alpha
Helix 6
6
A
167 171Right-handed 310
Helix 7
7
A
224 236Right-handed alpha
Helix 8
8
A
261 278Right-handed alpha
Helix 9
9
A
294 307Right-handed alpha
Helix 10
10
A
321 323Right-handed 310
Helix 11
11
A
384 403Right-handed alpha
Helix 12
12
A
407 418Right-handed alpha
Helix 13
13
A
425 429Right-handed 310
Helix 14
14
A
430 435Right-handed alpha
Helix 15
15
E
295 304Right-handed 310
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There are 11 sheets in PDB entry 3GCW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
63 65first strand
Strand 2
P
140 151parallel
Strand 3
A
258 260anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
110 115first strand
Strand 2
P
121 125anti-parallel
Strand 3
P
73 82anti-parallel
Strand 4
P
140 151anti-parallel
Strand 5
A
289 292anti-parallel
Strand 6
A
325 326anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
246 251parallel
Strand 3
A
181 186parallel
Strand 4
A
283 287parallel
Strand 5
A
310 314parallel
Strand 6
A
334 339parallel
Strand 7
A
361 364parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
351 352anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
378 382anti-parallel
Strand 3
E
307 309anti-parallel
Strand 4
E
316 318anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
440 441anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 461first strand
Strand 2
A
521 528anti-parallel
Strand 3
A
482 489anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 475first strand
Strand 2
A
506 513anti-parallel
Strand 3
A
495 503anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 615first strand
Strand 2
A
672 681anti-parallel
Strand 3
A
631 638anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 625first strand
Strand 2
A
653 658anti-parallel
Strand 3
A
644 650anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
324 326first strand
Strand 2
E
330 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il