Analysis of interatomic Contacts of Structural Units in PDB entry:
3GD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GD5 entry

There are 6 chains in PDB entry 3GD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10GLY 313
B
 THR 10GLY 313
C
 THR 10GLY 313
D
 THR 10GLY 313
E
 THR 10GLY 313
F
 THR 10GLY 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 3GD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
23 39Right-handed alpha
Helix 3
3
A
59 73Right-handed alpha
Helix 4
4
A
92 101Right-handed alpha
Helix 5
5
A
113 125Right-handed alpha
Helix 6
6
A
137 153Right-handed alpha
Helix 7
7
A
167 180Right-handed alpha
Helix 8
8
A
195 210Right-handed alpha
Helix 9
9
A
218 224Right-handed alpha
Helix 10
10
A
246 251Right-handed alpha
Helix 11
11
A
256 262Right-handed alpha
Helix 12
12
A
282 288Right-handed alpha
Helix 13
13
A
292 313Right-handed alpha
Helix 14
14
B
18 22Right-handed 310
Helix 15
15
B
23 39Right-handed alpha
Helix 16
16
B
59 73Right-handed alpha
Helix 17
17
B
92 104Right-handed alpha
Helix 18
18
B
113 125Right-handed alpha
Helix 19
19
B
137 153Right-handed alpha
Helix 20
20
B
167 180Right-handed alpha
Helix 21
21
B
195 210Right-handed alpha
Helix 22
22
B
218 224Right-handed alpha
Helix 23
23
B
245 251Right-handed alpha
Helix 24
24
B
252 254Right-handed 310
Helix 25
25
B
256 261Right-handed alpha
Helix 26
26
B
282 287Right-handed alpha
Helix 27
27
B
292 313Right-handed alpha
Helix 28
28
C
18 22Right-handed 310
Helix 29
29
C
23 39Right-handed alpha
Helix 30
30
C
59 73Right-handed alpha
Helix 31
31
C
92 104Right-handed alpha
Helix 32
32
C
113 125Right-handed alpha
Helix 33
33
C
137 153Right-handed alpha
Helix 34
34
C
167 180Right-handed alpha
Helix 35
35
C
189 193Right-handed 310
Helix 36
36
C
195 210Right-handed alpha
Helix 37
37
C
218 224Right-handed alpha
Helix 38
38
C
245 251Right-handed alpha
Helix 39
39
C
256 262Right-handed alpha
Helix 40
40
C
282 287Right-handed alpha
Helix 41
41
C
292 313Right-handed alpha
Helix 42
42
D
18 22Right-handed 310
Helix 43
43
D
23 39Right-handed alpha
Helix 44
44
D
59 73Right-handed alpha
Helix 45
45
D
92 101Right-handed alpha
Helix 46
46
D
113 125Right-handed alpha
Helix 47
47
D
137 153Right-handed alpha
Helix 48
48
D
167 180Right-handed alpha
Helix 49
49
D
195 210Right-handed alpha
Helix 50
50
D
218 224Right-handed alpha
Helix 51
51
D
245 251Right-handed alpha
Helix 52
52
D
252 254Right-handed 310
Helix 53
53
D
256 261Right-handed alpha
Helix 54
54
D
282 287Right-handed alpha
Helix 55
55
D
292 313Right-handed alpha
Helix 56
56
E
18 22Right-handed 310
Helix 57
57
E
23 40Right-handed alpha
Helix 58
58
E
59 73Right-handed alpha
Helix 59
59
E
92 104Right-handed alpha
Helix 60
60
E
113 125Right-handed alpha
Helix 61
61
E
137 153Right-handed alpha
Helix 62
62
E
167 180Right-handed alpha
Helix 63
63
E
195 210Right-handed alpha
Helix 64
64
E
218 224Right-handed alpha
Helix 65
65
E
246 251Right-handed alpha
Helix 66
66
E
252 254Right-handed 310
Helix 67
67
E
256 261Right-handed alpha
Helix 68
68
E
282 288Right-handed alpha
Helix 69
69
E
292 313Right-handed alpha
Helix 70
70
F
18 22Right-handed 310
Helix 71
71
F
23 39Right-handed alpha
Helix 72
72
F
59 72Right-handed alpha
Helix 73
73
F
92 104Right-handed alpha
Helix 74
74
F
113 125Right-handed alpha
Helix 75
75
F
137 153Right-handed alpha
Helix 76
76
F
167 180Right-handed alpha
Helix 77
77
F
189 193Right-handed 310
Helix 78
78
F
195 210Right-handed alpha
Helix 79
79
F
218 224Right-handed alpha
Helix 80
80
F
245 251Right-handed alpha
Helix 81
81
F
256 263Right-handed alpha
Helix 82
82
F
282 287Right-handed alpha
Helix 83
83
F
292 313Right-handed alpha
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There are 12 sheets in PDB entry 3GD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
50 55parallel
Strand 3
A
106 110parallel
Strand 4
A
128 132parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
183 187parallel
Strand 3
A
159 163parallel
Strand 4
A
228 231parallel
Strand 5
A
268 271parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
50 55parallel
Strand 3
B
106 110parallel
Strand 4
B
128 132parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
183 187parallel
Strand 3
B
159 163parallel
Strand 4
B
228 231parallel
Strand 5
B
268 271parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 80first strand
Strand 2
C
50 55parallel
Strand 3
C
106 110parallel
Strand 4
C
128 132parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 216first strand
Strand 2
C
183 187parallel
Strand 3
C
159 163parallel
Strand 4
C
228 231parallel
Strand 5
C
268 271parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 80first strand
Strand 2
D
50 55parallel
Strand 3
D
106 110parallel
Strand 4
D
128 132parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 216first strand
Strand 2
D
183 187parallel
Strand 3
D
159 163parallel
Strand 4
D
228 231parallel
Strand 5
D
268 271parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 79first strand
Strand 2
E
50 55parallel
Strand 3
E
107 110parallel
Strand 4
E
128 132parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
213 216first strand
Strand 2
E
183 187parallel
Strand 3
E
159 163parallel
Strand 4
E
228 231parallel
Strand 5
E
268 271parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
76 80first strand
Strand 2
F
50 55parallel
Strand 3
F
106 110parallel
Strand 4
F
128 132parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
213 216first strand
Strand 2
F
183 187parallel
Strand 3
F
159 163parallel
Strand 4
F
228 231parallel
Strand 5
F
268 271parallel
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