Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDB entry

There is 1 chain in PDB entry 3GDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 173LYS 806
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3GDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
183 189Right-handed alpha
Helix 2
2
A
197 202Right-handed alpha
Helix 3
3
A
254 258Right-handed 310
Helix 4
4
A
270 280Right-handed alpha
Helix 5
5
A
295 306Right-handed alpha
Helix 6
6
A
314 328Right-handed alpha
Helix 7
7
A
343 345Right-handed 310
Helix 8
8
A
346 364Right-handed alpha
Helix 9
9
A
392 397Right-handed 310
Helix 10
10
A
415 430Right-handed alpha
Helix 11
11
A
432 434Right-handed 310
Helix 12
12
A
442 446Right-handed alpha
Helix 13
13
A
447 450Right-handed 310
Helix 14
14
A
453 457Right-handed 310
Helix 15
15
A
473 479Right-handed 310
Helix 16
16
A
482 495Right-handed alpha
Helix 17
17
A
513 518Right-handed alpha
Helix 18
18
A
556 559Right-handed 310
Helix 19
19
A
647 649Right-handed 310
Helix 20
20
A
668 671Right-handed 310
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There are 10 sheets in PDB entry 3GDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
521 522anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
260 263parallel
Strand 3
A
284 293parallel
Strand 4
A
331 338parallel
Strand 5
A
369 373parallel
Strand 6
A
407 410parallel
Strand 7
A
436 441parallel
Strand 8
A
467 471parallel
Strand 9
A
226 230parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 526first strand
Strand 2
A
602 614parallel
Strand 3
A
568 571anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 526first strand
Strand 2
A
602 614parallel
Strand 3
A
674 684anti-parallel
Strand 4
A
632 638anti-parallel
Strand 5
A
651 653anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
688 701anti-parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
577 581anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
688 701anti-parallel
Strand 3
A
620 627anti-parallel
Strand 4
A
657 666anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
553 554anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
546 549anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 722first strand
Strand 2
A
725 733anti-parallel
Strand 3
A
761 768anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 757first strand
Strand 2
A
738 747anti-parallel
Strand 3
A
777 786anti-parallel
Strand 4
A
795 800anti-parallel
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