Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDC entry

There are 3 chains in PDB entry 3GDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12ALA 299
B
 SER 14SER 298
C
 SER 14ALA 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3GDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
23 30Right-handed alpha
Helix 3
3
A
108 112Right-handed 310
Helix 4
4
A
148 155Right-handed alpha
Helix 5
5
A
201 206Right-handed alpha
Helix 6
6
A
283 288Right-handed alpha
Helix 7
7
B
16 21Right-handed alpha
Helix 8
8
B
23 30Right-handed alpha
Helix 9
9
B
108 112Right-handed 310
Helix 10
10
B
148 155Right-handed alpha
Helix 11
11
B
201 206Right-handed alpha
Helix 12
12
B
283 289Right-handed alpha
Helix 13
13
C
16 21Right-handed alpha
Helix 14
14
C
23 29Right-handed alpha
Helix 15
15
C
108 112Right-handed 310
Helix 16
16
C
148 155Right-handed alpha
Helix 17
17
C
201 206Right-handed alpha
Helix 18
18
C
283 288Right-handed alpha
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There are 15 sheets in PDB entry 3GDC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
78 82parallel
Strand 3
A
158 164parallel
Strand 4
A
138 143anti-parallel
Strand 5
A
102 103anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
44 60anti-parallel
Strand 3
A
63 70anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
44 60anti-parallel
Strand 3
A
86 93parallel
Strand 4
A
127 133anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
216 222parallel
Strand 4
A
264 269anti-parallel
Strand 5
A
239 243anti-parallel
Strand 6
A
252 254anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
292 298parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
229 234anti-parallel
Strand 5
A
256 260anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
78 82parallel
Strand 3
B
158 164parallel
Strand 4
B
138 143anti-parallel
Strand 5
B
102 103anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
44 60anti-parallel
Strand 3
B
63 70anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
44 60anti-parallel
Strand 3
B
86 93parallel
Strand 4
B
127 133anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
174 183anti-parallel
Strand 3
B
215 222parallel
Strand 4
B
264 270anti-parallel
Strand 5
B
239 243anti-parallel
Strand 6
B
252 254anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
292 298parallel
Strand 3
B
275 280anti-parallel
Strand 4
B
229 234anti-parallel
Strand 5
B
256 260anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
78 82parallel
Strand 3
C
158 164parallel
Strand 4
C
138 143anti-parallel
Strand 5
C
102 103anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
44 60anti-parallel
Strand 3
C
63 70anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
44 60anti-parallel
Strand 3
C
86 93parallel
Strand 4
C
127 133anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 196first strand
Strand 2
C
174 183anti-parallel
Strand 3
C
215 222parallel
Strand 4
C
264 270anti-parallel
Strand 5
C
239 243anti-parallel
Strand 6
C
252 254anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 211first strand
Strand 2
C
292 298parallel
Strand 3
C
275 280anti-parallel
Strand 4
C
229 234anti-parallel
Strand 5
C
256 260anti-parallel
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