Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDF entry

There are 4 chains in PDB entry 3GDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 267
B
 MET 1ARG 267
C
 MET 1ARG 267
D
 MET 1ARG 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3GDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed alpha
Helix 2
2
A
33 45Right-handed alpha
Helix 3
3
A
57 72Right-handed alpha
Helix 4
4
A
84 100Right-handed alpha
Helix 5
5
A
121 133Right-handed alpha
Helix 6
6
A
133 151Right-handed alpha
Helix 7
7
A
160 164Right-handed 310
Helix 8
8
A
172 193Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
216 227Right-handed alpha
Helix 11
11
A
238 247Right-handed alpha
Helix 12
12
A
248 251Right-handed 310
Helix 13
13
A
263 267Right-handed 310
Helix 14
14
B
11 17Right-handed alpha
Helix 15
15
B
33 45Right-handed alpha
Helix 16
16
B
57 72Right-handed alpha
Helix 17
17
B
84 100Right-handed alpha
Helix 18
18
B
121 133Right-handed alpha
Helix 19
19
B
133 151Right-handed alpha
Helix 20
20
B
160 164Right-handed 310
Helix 21
21
B
172 193Right-handed alpha
Helix 22
22
B
211 215Right-handed 310
Helix 23
23
B
216 227Right-handed alpha
Helix 24
24
B
238 247Right-handed alpha
Helix 25
25
B
248 251Right-handed 310
Helix 26
26
B
263 267Right-handed 310
Helix 27
27
C
11 17Right-handed alpha
Helix 28
28
C
33 45Right-handed alpha
Helix 29
29
C
56 72Right-handed alpha
Helix 30
30
C
84 100Right-handed alpha
Helix 31
31
C
121 151Right-handed alpha
Helix 32
32
C
160 164Right-handed 310
Helix 33
33
C
172 193Right-handed alpha
Helix 34
34
C
211 215Right-handed 310
Helix 35
35
C
216 227Right-handed alpha
Helix 36
36
C
238 247Right-handed alpha
Helix 37
37
C
248 251Right-handed 310
Helix 38
38
C
263 267Right-handed 310
Helix 39
39
D
11 17Right-handed alpha
Helix 40
40
D
33 45Right-handed alpha
Helix 41
41
D
56 72Right-handed alpha
Helix 42
42
D
84 100Right-handed alpha
Helix 43
43
D
121 151Right-handed alpha
Helix 44
44
D
160 164Right-handed 310
Helix 45
45
D
172 193Right-handed alpha
Helix 46
46
D
216 227Right-handed alpha
Helix 47
47
D
238 247Right-handed alpha
Helix 48
48
D
263 267Right-handed 310
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There are 8 sheets in PDB entry 3GDF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
48 53parallel
Strand 3
A
22 25parallel
Strand 4
A
104 107parallel
Strand 5
A
154 158parallel
Strand 6
A
198 204parallel
Strand 7
A
257 260parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
233 234parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
48 53parallel
Strand 3
B
22 25parallel
Strand 4
B
104 107parallel
Strand 5
B
154 158parallel
Strand 6
B
198 204parallel
Strand 7
B
257 260parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
233 234parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 79first strand
Strand 2
C
48 53parallel
Strand 3
C
22 25parallel
Strand 4
C
104 107parallel
Strand 5
C
154 158parallel
Strand 6
C
198 204parallel
Strand 7
C
256 260parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
233 234parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 79first strand
Strand 2
D
48 53parallel
Strand 3
D
22 25parallel
Strand 4
D
104 108parallel
Strand 5
D
154 158parallel
Strand 6
D
198 204parallel
Strand 7
D
257 260parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
207 208first strand
Strand 2
D
233 234parallel
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