Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDH entry

There are 3 chains in PDB entry 3GDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 634ASP 844
B
 GLU 637ARG 847
C
 VAL 641ARG 847
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3GDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
635 641Right-handed alpha
Helix 2
2
A
644 650Right-handed alpha
Helix 3
3
A
650 655Right-handed alpha
Helix 4
4
A
657 661Right-handed 310
Helix 5
5
A
665 672Right-handed alpha
Helix 6
6
A
674 689Right-handed alpha
Helix 7
7
A
702 711Right-handed alpha
Helix 8
8
A
721 735Right-handed alpha
Helix 9
9
A
737 739Right-handed 310
Helix 10
10
A
747 752Right-handed alpha
Helix 11
11
A
753 755Right-handed 310
Helix 12
12
A
768 774Right-handed 310
Helix 13
13
A
786 798Right-handed alpha
Helix 14
14
A
810 817Right-handed alpha
Helix 15
15
B
641 643Right-handed 310
Helix 16
16
B
644 650Right-handed alpha
Helix 17
17
B
650 655Right-handed alpha
Helix 18
18
B
657 661Right-handed 310
Helix 19
19
B
665 672Right-handed alpha
Helix 20
20
B
674 687Right-handed alpha
Helix 21
21
B
702 711Right-handed alpha
Helix 22
22
B
721 735Right-handed alpha
Helix 23
23
B
737 739Right-handed 310
Helix 24
24
B
747 752Right-handed alpha
Helix 25
25
B
753 755Right-handed 310
Helix 26
26
B
767 774Right-handed 310
Helix 27
27
B
786 798Right-handed alpha
Helix 28
28
B
810 817Right-handed alpha
Helix 29
29
B
843 846Right-handed 310
Helix 30
30
C
641 643Right-handed 310
Helix 31
31
C
644 650Right-handed alpha
Helix 32
32
C
650 655Right-handed alpha
Helix 33
33
C
657 661Right-handed 310
Helix 34
34
C
665 672Right-handed alpha
Helix 35
35
C
674 687Right-handed alpha
Helix 36
36
C
702 711Right-handed alpha
Helix 37
37
C
721 735Right-handed alpha
Helix 38
38
C
737 739Right-handed 310
Helix 39
39
C
747 752Right-handed alpha
Helix 40
40
C
753 755Right-handed 310
Helix 41
41
C
768 774Right-handed 310
Helix 42
42
C
786 798Right-handed alpha
Helix 43
43
C
810 817Right-handed alpha
Helix 44
44
C
843 846Right-handed 310
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There is 1 sheet ( A) in PDB entry 3GDH.

There are 21 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 831first strand
Strand 2
A
834 842anti-parallel
Strand 3
A
801 806anti-parallel
Strand 4
A
759 762parallel
Strand 5
A
693 696parallel
Strand 6
A
714 719parallel
Strand 7
A
741 745parallel
Strand 8
B
823 831parallel
Strand 9
B
834 841anti-parallel
Strand 10
B
801 806anti-parallel
Strand 11
B
759 762parallel
Strand 12
B
693 696parallel
Strand 13
B
714 719parallel
Strand 14
B
741 745parallel
Strand 15
C
823 831parallel
Strand 16
C
834 841anti-parallel
Strand 17
C
801 806anti-parallel
Strand 18
C
759 762parallel
Strand 19
C
693 696parallel
Strand 20
C
714 719parallel
Strand 21
C
741 745parallel
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