Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDO entry

There are 2 chains in PDB entry 3GDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10GLU 357
B
 SER 10GLU 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3GDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 28Right-handed alpha
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
65 70Right-handed alpha
Helix 5
5
A
85 96Right-handed alpha
Helix 6
6
A
109 124Right-handed alpha
Helix 7
7
A
131 135Right-handed 310
Helix 8
8
A
136 148Right-handed alpha
Helix 9
9
A
181 186Right-handed alpha
Helix 10
10
A
186 199Right-handed alpha
Helix 11
11
A
263 270Right-handed alpha
Helix 12
12
A
283 287Right-handed 310
Helix 13
13
A
310 324Right-handed alpha
Helix 14
14
A
330 351Right-handed alpha
Helix 15
15
B
22 28Right-handed alpha
Helix 16
16
B
29 35Right-handed alpha
Helix 17
17
B
48 56Right-handed alpha
Helix 18
18
B
65 70Right-handed alpha
Helix 19
19
B
85 96Right-handed alpha
Helix 20
20
B
109 124Right-handed alpha
Helix 21
21
B
131 135Right-handed 310
Helix 22
22
B
136 148Right-handed alpha
Helix 23
23
B
181 186Right-handed alpha
Helix 24
24
B
186 199Right-handed alpha
Helix 25
25
B
263 270Right-handed alpha
Helix 26
26
B
283 287Right-handed 310
Helix 27
27
B
310 324Right-handed alpha
Helix 28
28
B
330 351Right-handed alpha
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There are 4 sheets in PDB entry 3GDO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
39 45parallel
Strand 3
A
14 19parallel
Strand 4
A
76 79parallel
Strand 5
A
99 103parallel
Strand 6
A
127 130parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 303first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
254 258anti-parallel
Strand 4
A
247 250anti-parallel
Strand 5
A
156 160anti-parallel
Strand 6
A
230 236parallel
Strand 7
A
220 227anti-parallel
Strand 8
A
203 209anti-parallel
Strand 9
A
354 355anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
39 45parallel
Strand 3
B
14 19parallel
Strand 4
B
76 79parallel
Strand 5
B
99 103parallel
Strand 6
B
127 130parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 303first strand
Strand 2
B
288 294anti-parallel
Strand 3
B
254 258anti-parallel
Strand 4
B
247 251anti-parallel
Strand 5
B
154 160anti-parallel
Strand 6
B
230 236parallel
Strand 7
B
220 227anti-parallel
Strand 8
B
203 209anti-parallel
Strand 9
B
354 355anti-parallel
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