Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDQ entry

There is 1 chain in PDB entry 3GDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3GDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 60Right-handed alpha
Helix 2
2
A
61 66Right-handed 310
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
82 90Right-handed alpha
Helix 5
5
A
117 138Right-handed alpha
Helix 6
6
A
153 167Right-handed alpha
Helix 7
7
A
177 185Right-handed alpha
Helix 8
8
A
231 252Right-handed alpha
Helix 9
9
A
254 257Right-handed 310
Helix 10
10
A
258 276Right-handed alpha
Helix 11
11
A
301 308Right-handed alpha
Helix 12
12
A
308 315Right-handed alpha
Helix 13
13
A
315 326Right-handed alpha
Helix 14
14
A
329 333Right-handed 310
Helix 15
15
A
340 344Right-handed 310
Helix 16
16
A
345 356Right-handed alpha
Helix 17
17
A
369 384Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3GDQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
9 12anti-parallel
Strand 4
A
143 148parallel
Strand 5
A
170 176parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
44 46anti-parallel
Strand 3
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
102 109anti-parallel
Strand 3
A
112 116anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 227first strand
Strand 2
A
207 215anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
335 339parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 290first strand
Strand 2
A
293 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il