Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDT entry

There are 4 chains in PDB entry 3GDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ARG 262
B
 LYS 3ARG 262
C
 LYS 3GLN 266
D
 LYS 3GLN 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 3GDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
15 29Right-handed alpha
Helix 3
3
A
40 52Right-handed alpha
Helix 4
4
A
53 55Right-handed 310
Helix 5
5
A
61 65Right-handed 310
Helix 6
6
A
73 85Right-handed alpha
Helix 7
7
A
97 107Right-handed alpha
Helix 8
8
A
111 115Right-handed 310
Helix 9
9
A
123 126Right-handed 310
Helix 10
10
A
127 141Right-handed alpha
Helix 11
11
A
161 174Right-handed alpha
Helix 12
12
A
190 194Right-handed 310
Helix 13
13
A
211 216Right-handed alpha
Helix 14
14
A
220 227Right-handed alpha
Helix 15
15
A
234 238Right-handed 310
Helix 16
16
A
243 262Right-handed alpha
Helix 17
17
B
5 13Right-handed alpha
Helix 18
18
B
15 29Right-handed alpha
Helix 19
19
B
40 52Right-handed alpha
Helix 20
20
B
53 55Right-handed 310
Helix 21
21
B
61 65Right-handed 310
Helix 22
22
B
73 85Right-handed alpha
Helix 23
23
B
97 107Right-handed alpha
Helix 24
24
B
111 115Right-handed 310
Helix 25
25
B
123 126Right-handed 310
Helix 26
26
B
127 141Right-handed alpha
Helix 27
27
B
161 173Right-handed alpha
Helix 28
28
B
190 194Right-handed 310
Helix 29
29
B
213 217Right-handed 310
Helix 30
30
B
220 226Right-handed alpha
Helix 31
31
B
234 238Right-handed 310
Helix 32
32
B
243 262Right-handed alpha
Helix 33
33
C
5 13Right-handed alpha
Helix 34
34
C
15 29Right-handed alpha
Helix 35
35
C
40 52Right-handed alpha
Helix 36
36
C
53 55Right-handed 310
Helix 37
37
C
61 65Right-handed 310
Helix 38
38
C
73 85Right-handed alpha
Helix 39
39
C
97 107Right-handed alpha
Helix 40
40
C
111 116Right-handed alpha
Helix 41
41
C
123 126Right-handed 310
Helix 42
42
C
127 141Right-handed alpha
Helix 43
43
C
162 173Right-handed alpha
Helix 44
44
C
190 194Right-handed 310
Helix 45
45
C
219 226Right-handed alpha
Helix 46
46
C
234 238Right-handed 310
Helix 47
47
C
243 262Right-handed alpha
Helix 48
48
D
5 13Right-handed alpha
Helix 49
49
D
15 29Right-handed alpha
Helix 50
50
D
40 52Right-handed alpha
Helix 51
51
D
53 55Right-handed 310
Helix 52
52
D
61 65Right-handed 310
Helix 53
53
D
73 85Right-handed alpha
Helix 54
54
D
97 107Right-handed alpha
Helix 55
55
D
111 115Right-handed 310
Helix 56
56
D
123 126Right-handed 310
Helix 57
57
D
127 141Right-handed alpha
Helix 58
58
D
161 173Right-handed alpha
Helix 59
59
D
190 194Right-handed 310
Helix 60
60
D
219 226Right-handed alpha
Helix 61
61
D
234 238Right-handed 310
Helix 62
62
D
243 262Right-handed alpha
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There are 6 sheets in PDB entry 3GDT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
57 60parallel
Strand 3
A
87 94parallel
Strand 4
A
118 121parallel
Strand 5
A
146 150parallel
Strand 6
A
179 183parallel
Strand 7
A
198 202parallel
Strand 8
A
230 233parallel
Strand 9
A
32 35parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
218 219parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
57 60parallel
Strand 3
B
87 94parallel
Strand 4
B
118 121parallel
Strand 5
B
146 150parallel
Strand 6
B
179 183parallel
Strand 7
B
198 202parallel
Strand 8
B
230 233parallel
Strand 9
B
32 35parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
218 219parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
57 60parallel
Strand 3
C
87 94parallel
Strand 4
C
118 121parallel
Strand 5
C
146 150parallel
Strand 6
C
179 183parallel
Strand 7
C
198 202parallel
Strand 8
C
230 233parallel
Strand 9
C
32 35parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
57 60parallel
Strand 3
D
87 94parallel
Strand 4
D
118 121parallel
Strand 5
D
146 150parallel
Strand 6
D
179 183parallel
Strand 7
D
198 201parallel
Strand 8
D
230 233parallel
Strand 9
D
32 35parallel
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