Analysis of interatomic Contacts of Structural Units in PDB entry:
3GDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GDW entry

There are 2 chains in PDB entry 3GDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 541SER 675
B
 SER 541GLN 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
555 569Right-handed alpha
Helix 2
2
A
583 597Right-handed alpha
Helix 3
3
A
598 603Right-handed 310
Helix 4
4
A
612 616Right-handed 310
Helix 5
5
A
617 627Right-handed alpha
Helix 6
6
A
637 650Right-handed alpha
Helix 7
7
A
653 673Right-handed alpha
Helix 8
8
B
555 569Right-handed alpha
Helix 9
9
B
583 598Right-handed alpha
Helix 10
10
B
599 602Right-handed 310
Helix 11
11
B
612 616Right-handed 310
Helix 12
12
B
617 627Right-handed alpha
Helix 13
13
B
637 650Right-handed alpha
Helix 14
14
B
653 676Right-handed alpha
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There are 2 sheets in PDB entry 3GDW. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 578first strand
Strand 2
A
546 552parallel
Strand 3
A
606 610parallel
Strand 4
A
630 633parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 578first strand
Strand 2
B
546 552parallel
Strand 3
B
606 610parallel
Strand 4
B
630 633parallel
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