Analysis of interatomic Contacts of Structural Units in PDB entry:
3GE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GE8 entry

There are 8 chains in PDB entry 3GE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	CYS 492
B	SER 2	ASP 307
C	SER 2	GLU 83
E	SER 2	MET 103
D	ALA 2	LYS 491
F	PHE 3	ASP 307
G	SER 2	GLU 83
H	THR 3	MET 103

There are111 helices in PDB entry 3GE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	14	Right-handed alpha
Helix 2	2	A	24	29	Right-handed alpha
Helix 3	3	A	30	35	Right-handed alpha
Helix 4	4	A	40	45	Right-handed alpha
Helix 5	5	A	54	77	Right-handed alpha
Helix 6	6	A	80	85	Right-handed alpha
Helix 7	7	A	86	118	Right-handed alpha
Helix 8	8	A	120	147	Right-handed alpha
Helix 9	9	A	148	155	Right-handed 310
Helix 10	10	A	156	161	Right-handed alpha
Helix 11	11	A	162	164	Right-handed 310
Helix 12	12	A	166	180	Right-handed alpha
Helix 13	13	A	184	192	Right-handed alpha
Helix 14	14	A	199	206	Right-handed alpha
Helix 15	15	A	206	215	Right-handed alpha
Helix 16	16	A	217	235	Right-handed alpha
Helix 17	17	A	237	248	Right-handed alpha
Helix 18	18	A	250	279	Right-handed alpha
Helix 19	19	A	282	286	Right-handed 310
Helix 20	20	A	289	298	Right-handed alpha
Helix 21	21	A	301	309	Right-handed alpha
Helix 22	22	A	316	338	Right-handed alpha
Helix 23	23	A	339	342	Right-handed 310
Helix 24	24	A	351	362	Right-handed alpha
Helix 25	25	A	368	382	Right-handed alpha
Helix 26	26	A	384	389	Right-handed 310
Helix 27	27	A	408	412	Right-handed 310
Helix 28	28	A	430	440	Right-handed alpha
Helix 29	29	A	440	445	Right-handed alpha
Helix 30	30	A	449	456	Right-handed alpha
Helix 31	31	A	463	471	Right-handed alpha
Helix 32	32	A	475	479	Right-handed 310
Helix 33	33	A	486	492	Right-handed 310
Helix 34	34	B	12	16	Right-handed 310
Helix 35	35	B	23	30	Right-handed alpha
Helix 36	36	B	33	37	Right-handed 310
Helix 37	37	B	49	59	Right-handed alpha
Helix 38	38	B	68	72	Right-handed 310
Helix 39	39	B	79	104	Right-handed alpha
Helix 40	40	B	105	110	Right-handed 310
Helix 41	41	B	113	122	Right-handed alpha
Helix 42	42	B	124	143	Right-handed alpha
Helix 43	43	B	145	177	Right-handed alpha
Helix 44	44	B	185	193	Right-handed alpha
Helix 45	45	B	193	207	Right-handed alpha
Helix 46	46	B	211	221	Right-handed alpha
Helix 47	47	B	222	231	Right-handed alpha
Helix 48	48	B	231	242	Right-handed alpha
Helix 49	49	B	245	274	Right-handed alpha
Helix 50	50	B	277	306	Right-handed alpha
Helix 51	51	C	26	37	Right-handed alpha
Helix 52	52	C	66	71	Right-handed alpha
Helix 53	53	E	2	10	Right-handed alpha
Helix 54	54	E	23	35	Right-handed alpha
Helix 55	55	E	61	69	Right-handed alpha
Helix 56	56	E	73	79	Right-handed 310
Helix 57	57	D	5	14	Right-handed alpha
Helix 58	58	D	24	29	Right-handed alpha
Helix 59	59	D	30	35	Right-handed alpha
Helix 60	60	D	40	45	Right-handed alpha
Helix 61	61	D	54	77	Right-handed alpha
Helix 62	62	D	80	85	Right-handed alpha
Helix 63	63	D	86	118	Right-handed alpha
Helix 64	64	D	120	147	Right-handed alpha
Helix 65	65	D	152	155	Right-handed 310
Helix 66	66	D	156	161	Right-handed alpha
Helix 67	67	D	162	164	Right-handed 310
Helix 68	68	D	166	180	Right-handed alpha
Helix 69	69	D	184	192	Right-handed alpha
Helix 70	70	D	200	206	Right-handed alpha
Helix 71	71	D	206	215	Right-handed alpha
Helix 72	72	D	217	235	Right-handed alpha
Helix 73	73	D	237	248	Right-handed alpha
Helix 74	74	D	250	279	Right-handed alpha
Helix 75	75	D	282	286	Right-handed 310
Helix 76	76	D	289	298	Right-handed alpha
Helix 77	77	D	301	309	Right-handed alpha
Helix 78	78	D	316	338	Right-handed alpha
Helix 79	79	D	339	342	Right-handed 310
Helix 80	80	D	351	362	Right-handed alpha
Helix 81	81	D	368	382	Right-handed alpha
Helix 82	82	D	384	389	Right-handed 310
Helix 83	83	D	430	440	Right-handed alpha
Helix 84	84	D	440	445	Right-handed alpha
Helix 85	85	D	449	456	Right-handed alpha
Helix 86	86	D	463	471	Right-handed alpha
Helix 87	87	D	475	479	Right-handed 310
Helix 88	88	D	486	491	Right-handed 310
Helix 89	89	F	12	16	Right-handed 310
Helix 90	90	F	23	30	Right-handed alpha
Helix 91	91	F	33	37	Right-handed 310
Helix 92	92	F	49	59	Right-handed alpha
Helix 93	93	F	68	72	Right-handed 310
Helix 94	94	F	79	104	Right-handed alpha
Helix 95	95	F	105	110	Right-handed 310
Helix 96	96	F	113	122	Right-handed alpha
Helix 97	97	F	124	143	Right-handed alpha
Helix 98	98	F	145	177	Right-handed alpha
Helix 99	99	F	185	193	Right-handed alpha
Helix 100	100	F	193	207	Right-handed alpha
Helix 101	101	F	211	222	Right-handed alpha
Helix 102	102	F	222	231	Right-handed alpha
Helix 103	103	F	231	242	Right-handed alpha
Helix 104	104	F	245	273	Right-handed alpha
Helix 105	105	F	274	276	Right-handed 310
Helix 106	106	F	277	306	Right-handed alpha
Helix 107	107	G	26	37	Right-handed alpha
Helix 108	108	H	3	10	Right-handed alpha
Helix 109	109	H	23	35	Right-handed alpha
Helix 110	110	H	61	69	Right-handed alpha
Helix 111	111	H	73	79	Right-handed 310

There are 8 sheets in PDB entry 3GE8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	424	428	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	22	first strand
Strand 2	C	3	10	anti-parallel
Strand 3	C	77	82	parallel
Strand 4	C	50	54	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	48	54	anti-parallel
Strand 3	E	13	19	anti-parallel
Strand 4	E	81	85	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	60	first strand
Strand 2	E	94	98	anti-parallel
Strand 3	E	87	90	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	421	first strand
Strand 2	D	424	428	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	22	first strand
Strand 2	G	3	10	anti-parallel
Strand 3	G	77	82	parallel
Strand 4	G	50	54	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	44	first strand
Strand 2	H	48	54	anti-parallel
Strand 3	H	13	19	anti-parallel
Strand 4	H	81	85	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	60	first strand
Strand 2	H	94	98	anti-parallel
Strand 3	H	87	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GE8