Analysis of interatomic Contacts of Structural Units in PDB entry:
3GEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GEB entry

There are 4 chains in PDB entry 3GEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 265LEU 538
B
 GLU 268LEU 538
C
 SER 265LEU 538
D
 GLU 268LEU 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3GEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
282 287Right-handed alpha
Helix 2
2
A
288 295Right-handed alpha
Helix 3
3
A
297 320Right-handed alpha
Helix 4
4
A
321 326Right-handed alpha
Helix 5
5
A
336 340Right-handed 310
Helix 6
6
A
375 395Right-handed alpha
Helix 7
7
A
397 403Right-handed alpha
Helix 8
8
A
405 421Right-handed alpha
Helix 9
9
A
423 438Right-handed alpha
Helix 10
10
A
450 461Right-handed alpha
Helix 11
11
A
468 470Right-handed 310
Helix 12
12
A
479 492Right-handed alpha
Helix 13
13
A
503 513Right-handed alpha
Helix 14
14
A
522 535Right-handed alpha
Helix 15
15
B
282 288Right-handed alpha
Helix 16
16
B
288 294Right-handed alpha
Helix 17
17
B
297 320Right-handed alpha
Helix 18
18
B
321 326Right-handed alpha
Helix 19
19
B
336 340Right-handed 310
Helix 20
20
B
375 395Right-handed alpha
Helix 21
21
B
398 403Right-handed alpha
Helix 22
22
B
403 421Right-handed alpha
Helix 23
23
B
423 438Right-handed alpha
Helix 24
24
B
450 461Right-handed alpha
Helix 25
25
B
468 470Right-handed 310
Helix 26
26
B
479 492Right-handed alpha
Helix 27
27
B
503 513Right-handed alpha
Helix 28
28
B
522 535Right-handed alpha
Helix 29
29
C
282 288Right-handed alpha
Helix 30
30
C
288 294Right-handed alpha
Helix 31
31
C
297 321Right-handed alpha
Helix 32
32
C
336 340Right-handed 310
Helix 33
33
C
374 394Right-handed alpha
Helix 34
34
C
397 403Right-handed alpha
Helix 35
35
C
405 421Right-handed alpha
Helix 36
36
C
423 438Right-handed alpha
Helix 37
37
C
450 461Right-handed alpha
Helix 38
38
C
468 470Right-handed 310
Helix 39
39
C
480 492Right-handed alpha
Helix 40
40
C
503 513Right-handed alpha
Helix 41
41
C
522 535Right-handed alpha
Helix 42
42
D
282 288Right-handed alpha
Helix 43
43
D
288 295Right-handed alpha
Helix 44
44
D
297 321Right-handed alpha
Helix 45
45
D
321 326Right-handed alpha
Helix 46
46
D
336 340Right-handed 310
Helix 47
47
D
344 348Right-handed 310
Helix 48
48
D
349 353Right-handed 310
Helix 49
49
D
373 395Right-handed alpha
Helix 50
50
D
397 403Right-handed alpha
Helix 51
51
D
403 421Right-handed alpha
Helix 52
52
D
423 438Right-handed alpha
Helix 53
53
D
450 461Right-handed alpha
Helix 54
54
D
468 470Right-handed 310
Helix 55
55
D
479 492Right-handed alpha
Helix 56
56
D
503 513Right-handed alpha
Helix 57
57
D
522 535Right-handed alpha
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There are 4 sheets in PDB entry 3GEB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
441 447parallel
Strand 3
A
269 273parallel
Strand 4
A
496 501parallel
Strand 5
A
517 519parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
D
517 519anti-parallel
Strand 3
D
496 501parallel
Strand 4
D
269 273parallel
Strand 5
D
441 447parallel
Strand 6
D
472 474parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 474first strand
Strand 2
B
441 447parallel
Strand 3
B
269 273parallel
Strand 4
B
496 501parallel
Strand 5
B
517 519parallel
Strand 6
C
536 537anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
472 474first strand
Strand 2
C
441 447parallel
Strand 3
C
269 273parallel
Strand 4
C
496 501parallel
Strand 5
C
517 519parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il