Analysis of interatomic Contacts of Structural Units in PDB entry:
3GEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GEE entry

There is 1 chain in PDB entry 3GEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9LYS 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3GEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 44Right-handed alpha
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
101 115Right-handed alpha
Helix 4
4
A
123 132Right-handed alpha
Helix 5
5
A
136 149Right-handed alpha
Helix 6
6
A
151 164Right-handed alpha
Helix 7
7
A
164 175Right-handed alpha
Helix 8
8
A
175 183Right-handed alpha
Helix 9
9
A
199 230Right-handed alpha
Helix 10
10
A
242 250Right-handed alpha
Helix 11
11
A
324 326Right-handed 310
Helix 12
12
A
327 338Right-handed alpha
Helix 13
13
A
356 368Right-handed alpha
Helix 14
14
A
381 390Right-handed alpha
Helix 15
15
A
390 395Right-handed alpha
Helix 16
16
A
408 427Right-handed alpha
Helix 17
17
A
437 454Right-handed alpha
Helix 18
18
A
460 467Right-handed alpha
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There are 2 sheets in PDB entry 3GEE. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
73 82anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
27 33anti-parallel
Strand 6
A
15 18anti-parallel
Strand 7
A
118 119parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
278 283anti-parallel
Strand 3
A
231 236parallel
Strand 4
A
312 318parallel
Strand 5
A
342 348parallel
Strand 6
A
371 373parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il