Analysis of interatomic Contacts of Structural Units in PDB entry:
3GEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GEK entry

There are 4 chains in PDB entry 3GEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PRO 132
B
 MSE 1GLN 133
C
 MSE 1LYS 134
D
 MSE 1VAL 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3GEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
18 23Right-handed 310
Helix 3
3
A
37 41Right-handed 310
Helix 4
4
A
48 69Right-handed alpha
Helix 5
5
B
2 7Right-handed alpha
Helix 6
6
B
37 41Right-handed 310
Helix 7
7
B
48 69Right-handed alpha
Helix 8
8
C
2 7Right-handed alpha
Helix 9
9
C
37 41Right-handed 310
Helix 10
10
C
48 68Right-handed alpha
Helix 11
11
D
2 7Right-handed alpha
Helix 12
12
D
37 41Right-handed 310
Helix 13
13
D
48 69Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3GEK. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
92 102anti-parallel
Strand 4
A
106 115anti-parallel
Strand 5
A
120 131anti-parallel
Strand 6
A
73 83anti-parallel
Strand 7
D
73 83anti-parallel
Strand 8
D
120 131anti-parallel
Strand 9
D
106 114anti-parallel
Strand 10
D
92 102anti-parallel
Strand 11
D
28 35anti-parallel
Strand 12
D
9 16anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 16first strand
Strand 2
B
28 35anti-parallel
Strand 3
B
92 102anti-parallel
Strand 4
B
106 114anti-parallel
Strand 5
B
120 132anti-parallel
Strand 6
B
72 83anti-parallel
Strand 7
C
72 83anti-parallel
Strand 8
C
120 132anti-parallel
Strand 9
C
106 114anti-parallel
Strand 10
C
92 102anti-parallel
Strand 11
C
27 35anti-parallel
Strand 12
C
9 17anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il