Analysis of interatomic Contacts of Structural Units in PDB entry:
3GF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GF6 entry

There are 2 chains in PDB entry 3GF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24GLU 242
B
 ASP 24SER 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3GF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
115 119Right-handed 310
Helix 2
2
A
166 170Right-handed 310
Helix 3
3
B
115 119Right-handed 310
Helix 4
4
B
166 170Right-handed 310
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There are 9 sheets in PDB entry 3GF6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
149 159anti-parallel
Strand 4
A
207 218anti-parallel
Strand 5
A
76 82anti-parallel
Strand 6
A
102 105anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
149 159anti-parallel
Strand 4
A
207 218anti-parallel
Strand 5
A
123 124anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
132 143anti-parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
49 55anti-parallel
Strand 6
A
87 88anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
132 143anti-parallel
Strand 4
A
191 203anti-parallel
Strand 5
A
183 185anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
173 178anti-parallel
Strand 3
B
149 159anti-parallel
Strand 4
B
207 218anti-parallel
Strand 5
B
76 82anti-parallel
Strand 6
B
102 105anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
173 178anti-parallel
Strand 3
B
149 159anti-parallel
Strand 4
B
207 218anti-parallel
Strand 5
B
123 124anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
226 229anti-parallel
Strand 3
B
132 143anti-parallel
Strand 4
B
234 239anti-parallel
Strand 5
B
49 55anti-parallel
Strand 6
B
87 88anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
226 229anti-parallel
Strand 3
B
132 143anti-parallel
Strand 4
B
191 203anti-parallel
Strand 5
B
183 185anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
222 223anti-parallel
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