Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GFG entry

There are 12 chains in PDB entry 3GFG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 7	LEU 356
B	ARG 8	GLU 357
C	ARG 8	GLU 357
D	THR 13	LEU 356
E	GLY 7	GLU 357
F	ARG 9	GLU 357
G	ARG 8	LEU 356
H	LYS 10	GLU 357
I	ASP 12	GLU 357
J	ASP 12	GLU 357
K	VAL 11	GLU 357
L	THR 13	GLU 357

There are180 helices in PDB entry 3GFG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	28	Right-handed alpha
Helix 2	2	A	29	36	Right-handed alpha
Helix 3	3	A	48	56	Right-handed alpha
Helix 4	4	A	65	70	Right-handed alpha
Helix 5	5	A	82	84	Right-handed 310
Helix 6	6	A	85	96	Right-handed alpha
Helix 7	7	A	109	124	Right-handed alpha
Helix 8	8	A	131	135	Right-handed 310
Helix 9	9	A	136	148	Right-handed alpha
Helix 10	10	A	180	186	Right-handed alpha
Helix 11	11	A	186	199	Right-handed alpha
Helix 12	12	A	263	270	Right-handed alpha
Helix 13	13	A	283	287	Right-handed 310
Helix 14	14	A	310	324	Right-handed alpha
Helix 15	15	A	330	351	Right-handed alpha
Helix 16	16	B	22	28	Right-handed alpha
Helix 17	17	B	29	36	Right-handed alpha
Helix 18	18	B	48	56	Right-handed alpha
Helix 19	19	B	65	70	Right-handed alpha
Helix 20	20	B	82	84	Right-handed 310
Helix 21	21	B	85	96	Right-handed alpha
Helix 22	22	B	109	124	Right-handed alpha
Helix 23	23	B	131	135	Right-handed 310
Helix 24	24	B	136	148	Right-handed alpha
Helix 25	25	B	170	176	Right-handed alpha
Helix 26	26	B	181	186	Right-handed alpha
Helix 27	27	B	186	199	Right-handed alpha
Helix 28	28	B	263	270	Right-handed alpha
Helix 29	29	B	283	287	Right-handed 310
Helix 30	30	B	310	324	Right-handed alpha
Helix 31	31	B	330	351	Right-handed alpha
Helix 32	32	C	22	27	Right-handed alpha
Helix 33	33	C	29	36	Right-handed alpha
Helix 34	34	C	48	56	Right-handed alpha
Helix 35	35	C	65	70	Right-handed alpha
Helix 36	36	C	82	84	Right-handed 310
Helix 37	37	C	85	96	Right-handed alpha
Helix 38	38	C	109	124	Right-handed alpha
Helix 39	39	C	131	135	Right-handed 310
Helix 40	40	C	136	148	Right-handed alpha
Helix 41	41	C	181	186	Right-handed alpha
Helix 42	42	C	186	199	Right-handed alpha
Helix 43	43	C	263	270	Right-handed alpha
Helix 44	44	C	283	287	Right-handed 310
Helix 45	45	C	310	324	Right-handed alpha
Helix 46	46	C	330	351	Right-handed alpha
Helix 47	47	D	22	28	Right-handed alpha
Helix 48	48	D	29	36	Right-handed alpha
Helix 49	49	D	48	56	Right-handed alpha
Helix 50	50	D	65	70	Right-handed alpha
Helix 51	51	D	82	84	Right-handed 310
Helix 52	52	D	85	96	Right-handed alpha
Helix 53	53	D	109	124	Right-handed alpha
Helix 54	54	D	131	135	Right-handed 310
Helix 55	55	D	136	148	Right-handed alpha
Helix 56	56	D	181	186	Right-handed alpha
Helix 57	57	D	186	199	Right-handed alpha
Helix 58	58	D	263	270	Right-handed alpha
Helix 59	59	D	283	287	Right-handed 310
Helix 60	60	D	310	324	Right-handed alpha
Helix 61	61	D	330	351	Right-handed alpha
Helix 62	62	E	22	28	Right-handed alpha
Helix 63	63	E	29	36	Right-handed alpha
Helix 64	64	E	48	56	Right-handed alpha
Helix 65	65	E	65	70	Right-handed alpha
Helix 66	66	E	82	84	Right-handed 310
Helix 67	67	E	85	96	Right-handed alpha
Helix 68	68	E	109	124	Right-handed alpha
Helix 69	69	E	131	135	Right-handed 310
Helix 70	70	E	136	148	Right-handed alpha
Helix 71	71	E	181	186	Right-handed alpha
Helix 72	72	E	186	199	Right-handed alpha
Helix 73	73	E	263	270	Right-handed alpha
Helix 74	74	E	283	287	Right-handed 310
Helix 75	75	E	310	324	Right-handed alpha
Helix 76	76	E	330	351	Right-handed alpha
Helix 77	77	F	22	28	Right-handed alpha
Helix 78	78	F	29	36	Right-handed alpha
Helix 79	79	F	48	56	Right-handed alpha
Helix 80	80	F	65	70	Right-handed alpha
Helix 81	81	F	82	84	Right-handed 310
Helix 82	82	F	85	96	Right-handed alpha
Helix 83	83	F	109	124	Right-handed alpha
Helix 84	84	F	131	135	Right-handed 310
Helix 85	85	F	136	148	Right-handed alpha
Helix 86	86	F	181	186	Right-handed alpha
Helix 87	87	F	186	199	Right-handed alpha
Helix 88	88	F	263	270	Right-handed alpha
Helix 89	89	F	283	287	Right-handed 310
Helix 90	90	F	310	324	Right-handed alpha
Helix 91	91	F	330	351	Right-handed alpha
Helix 92	92	G	22	29	Right-handed alpha
Helix 93	93	G	29	36	Right-handed alpha
Helix 94	94	G	48	54	Right-handed alpha
Helix 95	95	G	65	70	Right-handed alpha
Helix 96	96	G	82	96	Right-handed alpha
Helix 97	97	G	109	124	Right-handed alpha
Helix 98	98	G	131	135	Right-handed 310
Helix 99	99	G	136	148	Right-handed alpha
Helix 100	100	G	181	186	Right-handed alpha
Helix 101	101	G	186	199	Right-handed alpha
Helix 102	102	G	263	270	Right-handed alpha
Helix 103	103	G	283	287	Right-handed 310
Helix 104	104	G	310	324	Right-handed alpha
Helix 105	105	G	330	351	Right-handed alpha
Helix 106	106	H	22	28	Right-handed alpha
Helix 107	107	H	29	36	Right-handed alpha
Helix 108	108	H	48	56	Right-handed alpha
Helix 109	109	H	65	70	Right-handed alpha
Helix 110	110	H	82	84	Right-handed 310
Helix 111	111	H	85	96	Right-handed alpha
Helix 112	112	H	109	123	Right-handed alpha
Helix 113	113	H	131	135	Right-handed 310
Helix 114	114	H	136	148	Right-handed alpha
Helix 115	115	H	181	186	Right-handed alpha
Helix 116	116	H	186	199	Right-handed alpha
Helix 117	117	H	263	270	Right-handed alpha
Helix 118	118	H	283	287	Right-handed 310
Helix 119	119	H	310	324	Right-handed alpha
Helix 120	120	H	330	351	Right-handed alpha
Helix 121	121	I	22	28	Right-handed alpha
Helix 122	122	I	29	36	Right-handed alpha
Helix 123	123	I	48	56	Right-handed alpha
Helix 124	124	I	65	70	Right-handed alpha
Helix 125	125	I	82	84	Right-handed 310
Helix 126	126	I	85	95	Right-handed alpha
Helix 127	127	I	109	124	Right-handed alpha
Helix 128	128	I	131	135	Right-handed 310
Helix 129	129	I	136	148	Right-handed alpha
Helix 130	130	I	181	186	Right-handed alpha
Helix 131	131	I	186	199	Right-handed alpha
Helix 132	132	I	263	270	Right-handed alpha
Helix 133	133	I	283	287	Right-handed 310
Helix 134	134	I	310	324	Right-handed alpha
Helix 135	135	I	330	351	Right-handed alpha
Helix 136	136	J	22	28	Right-handed alpha
Helix 137	137	J	29	36	Right-handed alpha
Helix 138	138	J	48	56	Right-handed alpha
Helix 139	139	J	65	70	Right-handed alpha
Helix 140	140	J	82	84	Right-handed 310
Helix 141	141	J	85	96	Right-handed alpha
Helix 142	142	J	109	124	Right-handed alpha
Helix 143	143	J	131	135	Right-handed 310
Helix 144	144	J	136	148	Right-handed alpha
Helix 145	145	J	181	186	Right-handed alpha
Helix 146	146	J	186	199	Right-handed alpha
Helix 147	147	J	263	270	Right-handed alpha
Helix 148	148	J	283	287	Right-handed 310
Helix 149	149	J	310	324	Right-handed alpha
Helix 150	150	J	330	351	Right-handed alpha
Helix 151	151	K	22	27	Right-handed alpha
Helix 152	152	K	29	36	Right-handed alpha
Helix 153	153	K	48	56	Right-handed alpha
Helix 154	154	K	65	70	Right-handed alpha
Helix 155	155	K	82	84	Right-handed 310
Helix 156	156	K	85	96	Right-handed alpha
Helix 157	157	K	109	123	Right-handed alpha
Helix 158	158	K	131	135	Right-handed 310
Helix 159	159	K	136	148	Right-handed alpha
Helix 160	160	K	181	186	Right-handed alpha
Helix 161	161	K	186	199	Right-handed alpha
Helix 162	162	K	263	271	Right-handed alpha
Helix 163	163	K	283	287	Right-handed 310
Helix 164	164	K	310	324	Right-handed alpha
Helix 165	165	K	330	351	Right-handed alpha
Helix 166	166	L	22	29	Right-handed alpha
Helix 167	167	L	29	36	Right-handed alpha
Helix 168	168	L	48	54	Right-handed alpha
Helix 169	169	L	65	70	Right-handed alpha
Helix 170	170	L	82	84	Right-handed 310
Helix 171	171	L	85	97	Right-handed alpha
Helix 172	172	L	109	124	Right-handed alpha
Helix 173	173	L	131	135	Right-handed 310
Helix 174	174	L	136	148	Right-handed alpha
Helix 175	175	L	180	186	Right-handed alpha
Helix 176	176	L	186	199	Right-handed alpha
Helix 177	177	L	263	271	Right-handed alpha
Helix 178	178	L	283	287	Right-handed 310
Helix 179	179	L	310	324	Right-handed alpha
Helix 180	180	L	330	351	Right-handed alpha

There are 25 sheets in PDB entry 3GFG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	39	45	parallel
Strand 3	A	14	19	parallel
Strand 4	A	76	79	parallel
Strand 5	A	99	102	parallel
Strand 6	A	127	129	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	303	first strand
Strand 2	A	288	294	anti-parallel
Strand 3	A	254	258	anti-parallel
Strand 4	A	247	250	anti-parallel
Strand 5	A	156	160	anti-parallel
Strand 6	A	230	236	parallel
Strand 7	A	220	227	anti-parallel
Strand 8	A	203	209	anti-parallel
Strand 9	A	354	355	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	39	45	parallel
Strand 3	B	14	19	parallel
Strand 4	B	76	79	parallel
Strand 5	B	99	102	parallel
Strand 6	B	127	129	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	303	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	254	258	anti-parallel
Strand 4	B	247	250	anti-parallel
Strand 5	B	156	160	anti-parallel
Strand 6	B	230	236	parallel
Strand 7	B	220	227	anti-parallel
Strand 8	B	203	209	anti-parallel
Strand 9	B	354	355	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	39	45	parallel
Strand 3	C	14	19	parallel
Strand 4	C	76	79	parallel
Strand 5	C	99	103	parallel
Strand 6	C	127	130	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	303	first strand
Strand 2	C	288	294	anti-parallel
Strand 3	C	254	258	anti-parallel
Strand 4	C	247	250	anti-parallel
Strand 5	C	156	160	anti-parallel
Strand 6	C	230	236	parallel
Strand 7	C	220	227	anti-parallel
Strand 8	C	203	209	anti-parallel
Strand 9	C	354	355	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	39	45	parallel
Strand 3	D	14	19	parallel
Strand 4	D	76	79	parallel
Strand 5	D	99	102	parallel
Strand 6	D	127	129	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	303	first strand
Strand 2	D	288	294	anti-parallel
Strand 3	D	254	258	anti-parallel
Strand 4	D	247	250	anti-parallel
Strand 5	D	156	160	anti-parallel
Strand 6	D	230	236	parallel
Strand 7	D	220	227	anti-parallel
Strand 8	D	203	209	anti-parallel
Strand 9	D	354	355	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	39	45	parallel
Strand 3	E	14	19	parallel
Strand 4	E	76	79	parallel
Strand 5	E	99	102	parallel
Strand 6	E	127	129	parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	302	first strand
Strand 2	E	289	294	anti-parallel
Strand 3	E	254	258	anti-parallel
Strand 4	E	247	250	anti-parallel
Strand 5	E	156	160	anti-parallel
Strand 6	E	230	236	parallel
Strand 7	E	220	227	anti-parallel
Strand 8	E	203	209	anti-parallel
Strand 9	E	354	355	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	39	45	parallel
Strand 3	F	14	19	parallel
Strand 4	F	76	79	parallel
Strand 5	F	99	102	parallel
Strand 6	F	127	129	parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	297	303	first strand
Strand 2	F	288	294	anti-parallel
Strand 3	F	254	258	anti-parallel
Strand 4	F	247	250	anti-parallel
Strand 5	F	156	160	anti-parallel
Strand 6	F	230	236	parallel
Strand 7	F	220	227	anti-parallel
Strand 8	F	203	209	anti-parallel
Strand 9	F	354	355	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	62	first strand
Strand 2	G	39	45	parallel
Strand 3	G	14	19	parallel
Strand 4	G	76	79	parallel
Strand 5	G	99	103	parallel
Strand 6	G	127	130	parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	297	303	first strand
Strand 2	G	288	294	anti-parallel
Strand 3	G	254	258	anti-parallel
Strand 4	G	247	251	anti-parallel
Strand 5	G	154	160	anti-parallel
Strand 6	G	230	236	parallel
Strand 7	G	220	227	anti-parallel
Strand 8	G	203	209	anti-parallel
Strand 9	G	354	355	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	39	45	parallel
Strand 3	H	14	19	parallel
Strand 4	H	76	79	parallel
Strand 5	H	99	102	parallel
Strand 6	H	127	129	parallel

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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	297	303	first strand
Strand 2	H	288	294	anti-parallel
Strand 3	H	254	258	anti-parallel
Strand 4	H	247	250	anti-parallel
Strand 5	H	156	160	anti-parallel
Strand 6	H	230	236	parallel
Strand 7	H	220	227	anti-parallel
Strand 8	H	203	209	anti-parallel
Strand 9	H	354	355	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	39	45	parallel
Strand 3	I	14	19	parallel
Strand 4	I	76	79	parallel
Strand 5	I	99	102	parallel
Strand 6	I	127	129	parallel

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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	297	303	first strand
Strand 2	I	288	294	anti-parallel
Strand 3	I	254	258	anti-parallel
Strand 4	I	247	250	anti-parallel
Strand 5	I	156	160	anti-parallel
Strand 6	I	230	236	parallel
Strand 7	I	220	227	anti-parallel
Strand 8	I	203	209	anti-parallel
Strand 9	I	354	355	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	62	first strand
Strand 2	J	39	45	parallel
Strand 3	J	14	19	parallel
Strand 4	J	76	79	parallel
Strand 5	J	99	102	parallel
Strand 6	J	127	129	parallel

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There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	297	303	first strand
Strand 2	J	288	294	anti-parallel
Strand 3	J	254	258	anti-parallel
Strand 4	J	247	250	anti-parallel
Strand 5	J	156	160	anti-parallel
Strand 6	J	230	236	parallel
Strand 7	J	220	227	anti-parallel
Strand 8	J	203	209	anti-parallel
Strand 9	J	354	355	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	62	first strand
Strand 2	K	39	45	parallel
Strand 3	K	14	19	parallel
Strand 4	K	76	79	parallel
Strand 5	K	99	102	parallel
Strand 6	K	127	129	parallel

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There are 9 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	297	303	first strand
Strand 2	K	288	294	anti-parallel
Strand 3	K	254	258	anti-parallel
Strand 4	K	247	250	anti-parallel
Strand 5	K	156	160	anti-parallel
Strand 6	K	230	236	parallel
Strand 7	K	220	227	anti-parallel
Strand 8	K	203	209	anti-parallel
Strand 9	K	354	355	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	62	first strand
Strand 2	L	39	45	parallel
Strand 3	L	14	19	parallel
Strand 4	L	76	79	parallel
Strand 5	L	99	103	parallel
Strand 6	L	127	130	parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	297	299	first strand
Strand 2	L	288	294	anti-parallel
Strand 3	L	302	303	anti-parallel

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There are 9 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	297	299	first strand
Strand 2	L	288	294	anti-parallel
Strand 3	L	254	258	anti-parallel
Strand 4	L	247	250	anti-parallel
Strand 5	L	156	160	anti-parallel
Strand 6	L	230	236	parallel
Strand 7	L	220	227	anti-parallel
Strand 8	L	203	209	anti-parallel
Strand 9	L	354	355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GFG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFG