Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GFH entry

There are 2 chains in PDB entry 3GFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 215
B
 PRO 2PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3GFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
44 59Right-handed alpha
Helix 3
3
A
72 76Right-handed 310
Helix 4
4
A
92 108Right-handed alpha
Helix 5
5
A
154 169Right-handed alpha
Helix 6
6
A
198 214Right-handed alpha
Helix 7
7
B
21 29Right-handed alpha
Helix 8
8
B
44 59Right-handed alpha
Helix 9
9
B
72 76Right-handed 310
Helix 10
10
B
92 109Right-handed alpha
Helix 11
11
B
154 168Right-handed alpha
Helix 12
12
B
198 214Right-handed alpha
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There are 4 sheets in PDB entry 3GFH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
113 115anti-parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
148 153anti-parallel
Strand 5
A
186 191anti-parallel
Strand 6
A
172 177anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
62 68anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
62 68anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
123 129anti-parallel
Strand 3
B
148 153anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
172 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il