Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GFO entry

There is 1 chain in PDB entry 3GFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ILE 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3GFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 53Right-handed alpha
Helix 2
2
A
73 83Right-handed alpha
Helix 3
3
A
90 94Right-handed 310
Helix 4
4
A
99 110Right-handed alpha
Helix 5
5
A
114 129Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
143 157Right-handed alpha
Helix 9
9
A
173 192Right-handed alpha
Helix 10
10
A
204 209Right-handed 310
Helix 11
11
A
225 230Right-handed alpha
Helix 12
12
A
230 243Right-handed alpha
Helix 13
13
A
243 250Right-handed alpha
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There are 2 sheets in PDB entry 3GFO. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 30first strand
Strand 2
A
4 14anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
68 69anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
162 166parallel
Strand 3
A
194 199parallel
Strand 4
A
34 38parallel
Strand 5
A
211 216parallel
Strand 6
A
219 224anti-parallel
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