Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GFP entry

There is 1 chain in PDB entry 3GFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 300VAL 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 3GFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
315 328Right-handed alpha
Helix 2
2
A
339 353Right-handed alpha
Helix 3
3
A
365 379Right-handed alpha
Helix 4
4
A
416 425Right-handed alpha
Helix 5
5
A
442 456Right-handed alpha
Helix 6
6
A
468 479Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3GFP.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
383 387parallel
Strand 3
A
333 337parallel
Strand 4
A
401 404parallel
Strand 5
A
435 440parallel
Strand 6
A
305 310parallel
Strand 7
A
462 465parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il