Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GFV entry

There are 2 chains in PDB entry 3GFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 14ASN 299
B
 LYS 14GLU 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3GFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
53 55Right-handed 310
Helix 3
3
A
66 74Right-handed 310
Helix 4
4
A
87 94Right-handed alpha
Helix 5
5
A
102 107Right-handed 310
Helix 6
6
A
108 116Right-handed alpha
Helix 7
7
A
124 126Right-handed 310
Helix 8
8
A
127 143Right-handed alpha
Helix 9
9
A
145 171Right-handed alpha
Helix 10
10
A
194 199Right-handed alpha
Helix 11
11
A
219 227Right-handed alpha
Helix 12
12
A
236 241Right-handed alpha
Helix 13
13
A
245 251Right-handed alpha
Helix 14
14
A
252 256Right-handed 310
Helix 15
15
A
258 263Right-handed alpha
Helix 16
16
A
270 277Right-handed alpha
Helix 17
17
A
280 297Right-handed alpha
Helix 18
18
B
41 51Right-handed alpha
Helix 19
19
B
53 55Right-handed 310
Helix 20
20
B
66 74Right-handed 310
Helix 21
21
B
87 94Right-handed alpha
Helix 22
22
B
102 107Right-handed 310
Helix 23
23
B
108 116Right-handed alpha
Helix 24
24
B
124 126Right-handed 310
Helix 25
25
B
127 143Right-handed alpha
Helix 26
26
B
145 171Right-handed alpha
Helix 27
27
B
194 199Right-handed alpha
Helix 28
28
B
219 227Right-handed alpha
Helix 29
29
B
236 241Right-handed alpha
Helix 30
30
B
245 252Right-handed alpha
Helix 31
31
B
258 263Right-handed alpha
Helix 32
32
B
270 277Right-handed alpha
Helix 33
33
B
280 296Right-handed alpha
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There are 8 sheets in PDB entry 3GFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
24 31anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
57 60parallel
Strand 3
A
37 39parallel
Strand 4
A
98 101parallel
Strand 5
A
118 120parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
173 180parallel
Strand 3
A
183 187anti-parallel
Strand 4
A
216 218anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
173 180parallel
Strand 3
A
230 235parallel
Strand 4
A
266 268parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
24 31anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
57 60parallel
Strand 3
B
37 39parallel
Strand 4
B
98 101parallel
Strand 5
B
118 120parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
173 180parallel
Strand 3
B
183 187anti-parallel
Strand 4
B
216 218anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
173 180parallel
Strand 3
B
230 235parallel
Strand 4
B
266 268parallel
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