Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GFY entry

There are 2 chains in PDB entry 3GFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 400
B
 MET 1ARG 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
55 67Right-handed alpha
Helix 4
4
A
98 100Right-handed 310
Helix 5
5
A
103 113Right-handed alpha
Helix 6
6
A
123 136Right-handed alpha
Helix 7
7
A
137 140Right-handed 310
Helix 8
8
A
142 148Right-handed 310
Helix 9
9
A
198 206Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
A
210 218Right-handed alpha
Helix 12
12
A
218 228Right-handed alpha
Helix 13
13
A
241 247Right-handed alpha
Helix 14
14
A
250 261Right-handed alpha
Helix 15
15
A
265 268Right-handed 310
Helix 16
16
A
284 296Right-handed alpha
Helix 17
17
A
325 330Right-handed alpha
Helix 18
18
A
335 353Right-handed alpha
Helix 19
19
A
363 373Right-handed alpha
Helix 20
20
B
19 32Right-handed alpha
Helix 21
21
B
55 67Right-handed alpha
Helix 22
22
B
98 100Right-handed 310
Helix 23
23
B
103 113Right-handed alpha
Helix 24
24
B
119 122Right-handed 310
Helix 25
25
B
123 136Right-handed alpha
Helix 26
26
B
137 139Right-handed 310
Helix 27
27
B
142 148Right-handed 310
Helix 28
28
B
179 182Right-handed 310
Helix 29
29
B
198 205Right-handed alpha
Helix 30
30
B
207 209Right-handed 310
Helix 31
31
B
210 229Right-handed alpha
Helix 32
32
B
241 247Right-handed alpha
Helix 33
33
B
250 262Right-handed alpha
Helix 34
34
B
265 267Right-handed 310
Helix 35
35
B
281 296Right-handed alpha
Helix 36
36
B
325 330Right-handed alpha
Helix 37
37
B
335 353Right-handed alpha
Helix 38
38
B
363 373Right-handed alpha
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There are 8 sheets in PDB entry 3GFY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 81first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
94 96parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
395 399anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
183 192parallel
Strand 3
A
170 178anti-parallel
Strand 4
A
387 388anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
298 301parallel
Strand 3
A
321 324parallel
Strand 4
A
355 358parallel
Strand 5
A
377 378parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 81first strand
Strand 2
B
2 11anti-parallel
Strand 3
B
46 54anti-parallel
Strand 4
B
37 42anti-parallel
Strand 5
B
93 96parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
397 399anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
269 272parallel
Strand 3
B
235 239parallel
Strand 4
B
183 192parallel
Strand 5
B
170 178anti-parallel
Strand 6
B
387 388anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 324first strand
Strand 2
B
355 359parallel
Strand 3
B
378 379parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il