Analysis of interatomic Contacts of Structural Units in PDB entry:
3GFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GFZ entry

There are 2 chains in PDB entry 3GFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 400
B
 MET 1ARG 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3GFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
55 67Right-handed alpha
Helix 4
4
A
98 100Right-handed 310
Helix 5
5
A
103 113Right-handed alpha
Helix 6
6
A
123 136Right-handed alpha
Helix 7
7
A
137 140Right-handed 310
Helix 8
8
A
142 148Right-handed 310
Helix 9
9
A
198 205Right-handed alpha
Helix 10
10
A
206 209Right-handed 310
Helix 11
11
A
210 218Right-handed alpha
Helix 12
12
A
218 228Right-handed alpha
Helix 13
13
A
241 247Right-handed alpha
Helix 14
14
A
250 262Right-handed alpha
Helix 15
15
A
265 267Right-handed 310
Helix 16
16
A
275 280Right-handed alpha
Helix 17
17
A
284 296Right-handed alpha
Helix 18
18
A
310 315Right-handed alpha
Helix 19
19
A
325 330Right-handed alpha
Helix 20
20
A
335 353Right-handed alpha
Helix 21
21
A
363 373Right-handed alpha
Helix 22
22
B
19 35Right-handed alpha
Helix 23
23
B
55 67Right-handed alpha
Helix 24
24
B
98 100Right-handed 310
Helix 25
25
B
103 113Right-handed alpha
Helix 26
26
B
119 122Right-handed 310
Helix 27
27
B
123 136Right-handed alpha
Helix 28
28
B
137 140Right-handed 310
Helix 29
29
B
142 148Right-handed 310
Helix 30
30
B
198 205Right-handed alpha
Helix 31
31
B
206 209Right-handed 310
Helix 32
32
B
210 218Right-handed alpha
Helix 33
33
B
218 229Right-handed alpha
Helix 34
34
B
241 247Right-handed alpha
Helix 35
35
B
250 262Right-handed alpha
Helix 36
36
B
265 267Right-handed 310
Helix 37
37
B
275 280Right-handed alpha
Helix 38
38
B
281 296Right-handed alpha
Helix 39
39
B
312 317Right-handed alpha
Helix 40
40
B
325 330Right-handed alpha
Helix 41
41
B
331 334Right-handed 310
Helix 42
42
B
335 353Right-handed alpha
Helix 43
43
B
363 373Right-handed alpha
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There are 6 sheets in PDB entry 3GFZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 81first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
94 96parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
395 399anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
170 178anti-parallel
Strand 3
A
377 379anti-parallel
Strand 4
A
355 359parallel
Strand 5
A
321 324parallel
Strand 6
A
298 304parallel
Strand 7
A
269 274parallel
Strand 8
A
235 239parallel
Strand 9
A
183 192parallel
Strand 10
A
170 178anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 81first strand
Strand 2
B
2 10anti-parallel
Strand 3
B
46 54anti-parallel
Strand 4
B
37 42anti-parallel
Strand 5
B
93 96parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
397 399anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
170 178anti-parallel
Strand 3
B
377 379anti-parallel
Strand 4
B
355 359parallel
Strand 5
B
321 324parallel
Strand 6
B
298 304parallel
Strand 7
B
269 274parallel
Strand 8
B
235 239parallel
Strand 9
B
183 192parallel
Strand 10
B
170 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il