Analysis of interatomic Contacts of Structural Units in PDB entry:
3GG4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GG4 entry

There are 2 chains in PDB entry 3GG4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLN 542
B
 LEU 1GLN 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 3GG4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 67Right-handed alpha
Helix 2
2
A
69 71Right-handed 310
Helix 3
3
A
114 125Right-handed alpha
Helix 4
4
A
126 133Right-handed 310
Helix 5
5
A
140 152Right-handed alpha
Helix 6
6
A
152 157Right-handed alpha
Helix 7
7
A
165 175Right-handed alpha
Helix 8
8
A
181 189Right-handed alpha
Helix 9
9
A
207 212Right-handed 310
Helix 10
10
A
234 242Right-handed alpha
Helix 11
11
A
255 264Right-handed alpha
Helix 12
12
A
325 335Right-handed alpha
Helix 13
13
A
338 349Right-handed alpha
Helix 14
14
A
352 366Right-handed alpha
Helix 15
15
A
367 376Right-handed 310
Helix 16
16
A
408 436Right-handed alpha
Helix 17
17
A
448 452Right-handed 310
Helix 18
18
A
453 465Right-handed alpha
Helix 19
19
A
475 489Right-handed alpha
Helix 20
20
A
494 503Right-handed alpha
Helix 21
21
A
513 542Right-handed alpha
Helix 22
22
B
47 67Right-handed alpha
Helix 23
23
B
69 71Right-handed 310
Helix 24
24
B
114 125Right-handed alpha
Helix 25
25
B
126 133Right-handed 310
Helix 26
26
B
140 152Right-handed alpha
Helix 27
27
B
152 158Right-handed alpha
Helix 28
28
B
165 175Right-handed alpha
Helix 29
29
B
181 188Right-handed alpha
Helix 30
30
B
198 205Right-handed alpha
Helix 31
31
B
207 210Right-handed 310
Helix 32
32
B
211 216Right-handed alpha
Helix 33
33
B
234 242Right-handed alpha
Helix 34
34
B
255 265Right-handed alpha
Helix 35
35
B
325 336Right-handed alpha
Helix 36
36
B
338 349Right-handed alpha
Helix 37
37
B
352 366Right-handed alpha
Helix 38
38
B
367 376Right-handed 310
Helix 39
39
B
408 436Right-handed alpha
Helix 40
40
B
453 465Right-handed alpha
Helix 41
41
B
475 489Right-handed alpha
Helix 42
42
B
494 503Right-handed alpha
Helix 43
43
B
513 542Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3GG4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
73 80parallel
Strand 5
A
248 249parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
73 80parallel
Strand 5
A
253 254parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
106 107anti-parallel
Strand 3
A
84 88anti-parallel
Strand 4
A
159 164anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
222 223parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 308first strand
Strand 2
A
316 322anti-parallel
Strand 3
A
288 294anti-parallel
Strand 4
A
279 283anti-parallel
Strand 5
A
443 447parallel
Strand 6
A
467 471parallel
Strand 7
A
505 509anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
399 400anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 33first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
73 80parallel
Strand 5
B
248 249parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 33first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
73 80parallel
Strand 5
B
253 254parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
106 107anti-parallel
Strand 3
B
84 88anti-parallel
Strand 4
B
159 164anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
222 223parallel
Back to list of sheets
Back to top of page

There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 308first strand
Strand 2
B
316 322anti-parallel
Strand 3
B
288 294anti-parallel
Strand 4
B
279 284anti-parallel
Strand 5
B
443 448parallel
Strand 6
B
467 471parallel
Strand 7
B
505 509anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 381first strand
Strand 2
B
399 400anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il