Analysis of interatomic Contacts of Structural Units in PDB entry:
3GG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GG5 entry

There are 4 chains in PDB entry 3GG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 26LYS 308
B
 PRO 26THR 306
C
 PRO 26LYS 308
D
 PRO 26LYS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3GG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 44Right-handed alpha
Helix 2
2
A
80 93Right-handed alpha
Helix 3
3
A
97 103Right-handed alpha
Helix 4
4
A
109 113Right-handed 310
Helix 5
5
A
114 122Right-handed alpha
Helix 6
6
A
134 139Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
222 241Right-handed alpha
Helix 9
9
A
261 269Right-handed alpha
Helix 10
10
A
292 294Right-handed 310
Helix 11
11
B
29 44Right-handed alpha
Helix 12
12
B
80 93Right-handed alpha
Helix 13
13
B
98 104Right-handed alpha
Helix 14
14
B
114 119Right-handed 310
Helix 15
15
B
134 141Right-handed alpha
Helix 16
16
B
159 171Right-handed alpha
Helix 17
17
B
222 241Right-handed alpha
Helix 18
18
B
261 269Right-handed alpha
Helix 19
19
B
287 291Right-handed 310
Helix 20
20
B
292 294Right-handed 310
Helix 21
21
C
29 44Right-handed alpha
Helix 22
22
C
80 94Right-handed alpha
Helix 23
23
C
97 105Right-handed 310
Helix 24
24
C
106 111Right-handed alpha
Helix 25
25
C
114 120Right-handed alpha
Helix 26
26
C
134 142Right-handed alpha
Helix 27
27
C
161 171Right-handed alpha
Helix 28
28
C
186 190Right-handed 310
Helix 29
29
C
222 241Right-handed alpha
Helix 30
30
C
261 269Right-handed alpha
Helix 31
31
C
287 291Right-handed 310
Helix 32
32
C
292 294Right-handed 310
Helix 33
33
D
29 44Right-handed alpha
Helix 34
34
D
80 94Right-handed alpha
Helix 35
35
D
97 102Right-handed alpha
Helix 36
36
D
103 105Right-handed 310
Helix 37
37
D
114 121Right-handed alpha
Helix 38
38
D
134 139Right-handed alpha
Helix 39
39
D
159 171Right-handed alpha
Helix 40
40
D
222 241Right-handed alpha
Helix 41
41
D
259 269Right-handed alpha
Helix 42
42
D
287 291Right-handed 310
Helix 43
43
D
292 294Right-handed 310
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There are 8 sheets in PDB entry 3GG5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
54 66anti-parallel
Strand 3
A
244 258anti-parallel
Strand 4
A
207 218parallel
Strand 5
A
198 204anti-parallel
Strand 6
A
177 180anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
296 299anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
55 66anti-parallel
Strand 3
B
244 258anti-parallel
Strand 4
B
207 218parallel
Strand 5
B
196 204anti-parallel
Strand 6
B
177 180anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
296 299anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
54 66anti-parallel
Strand 3
C
244 258anti-parallel
Strand 4
C
207 218parallel
Strand 5
C
196 203anti-parallel
Strand 6
C
177 180anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 281first strand
Strand 2
C
296 298anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 46first strand
Strand 2
D
55 66anti-parallel
Strand 3
D
244 258anti-parallel
Strand 4
D
207 218parallel
Strand 5
D
198 203anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 281first strand
Strand 2
D
296 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il