Analysis of interatomic Contacts of Structural Units in PDB entry:
3GG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GG8 entry

There are 4 chains in PDB entry 3GG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 41GLU 531
B
 SER 42GLU 531
C
 PHE 36GLU 531
D
 ARG 40GLU 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 89 helices in PDB entry 3GG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed alpha
Helix 2
2
A
70 81Right-handed alpha
Helix 3
3
A
93 111Right-handed alpha
Helix 4
4
A
167 172Right-handed alpha
Helix 5
5
A
226 236Right-handed alpha
Helix 6
6
A
252 264Right-handed alpha
Helix 7
7
A
265 268Right-handed 310
Helix 8
8
A
278 284Right-handed alpha
Helix 9
9
A
284 292Right-handed alpha
Helix 10
10
A
299 306Right-handed alpha
Helix 11
11
A
307 325Right-handed alpha
Helix 12
12
A
336 341Right-handed 310
Helix 13
13
A
346 360Right-handed alpha
Helix 14
14
A
367 372Right-handed alpha
Helix 15
15
A
375 392Right-handed alpha
Helix 16
16
A
395 407Right-handed alpha
Helix 17
17
A
412 429Right-handed alpha
Helix 18
18
A
440 449Right-handed alpha
Helix 19
19
A
461 468Right-handed alpha
Helix 20
20
A
469 471Right-handed 310
Helix 21
21
A
484 499Right-handed alpha
Helix 22
22
B
42 46Right-handed 310
Helix 23
23
B
49 54Right-handed alpha
Helix 24
24
B
70 81Right-handed alpha
Helix 25
25
B
93 111Right-handed alpha
Helix 26
26
B
132 136Right-handed 310
Helix 27
27
B
167 172Right-handed 310
Helix 28
28
B
226 236Right-handed alpha
Helix 29
29
B
252 264Right-handed alpha
Helix 30
30
B
265 268Right-handed 310
Helix 31
31
B
278 284Right-handed alpha
Helix 32
32
B
284 292Right-handed alpha
Helix 33
33
B
307 326Right-handed alpha
Helix 34
34
B
336 341Right-handed 310
Helix 35
35
B
346 360Right-handed alpha
Helix 36
36
B
367 372Right-handed alpha
Helix 37
37
B
375 393Right-handed alpha
Helix 38
38
B
396 404Right-handed alpha
Helix 39
39
B
412 429Right-handed alpha
Helix 40
40
B
440 448Right-handed alpha
Helix 41
41
B
461 468Right-handed alpha
Helix 42
42
B
469 471Right-handed 310
Helix 43
43
B
484 498Right-handed alpha
Helix 44
44
C
40 46Right-handed 310
Helix 45
45
C
49 54Right-handed alpha
Helix 46
46
C
65 69Right-handed 310
Helix 47
47
C
70 81Right-handed alpha
Helix 48
48
C
93 111Right-handed alpha
Helix 49
49
C
132 136Right-handed 310
Helix 50
50
C
167 171Right-handed 310
Helix 51
51
C
226 236Right-handed alpha
Helix 52
52
C
252 264Right-handed alpha
Helix 53
53
C
278 284Right-handed alpha
Helix 54
54
C
284 292Right-handed alpha
Helix 55
55
C
299 303Right-handed alpha
Helix 56
56
C
307 326Right-handed alpha
Helix 57
57
C
336 341Right-handed 310
Helix 58
58
C
346 360Right-handed alpha
Helix 59
59
C
367 372Right-handed alpha
Helix 60
60
C
375 392Right-handed alpha
Helix 61
61
C
395 405Right-handed alpha
Helix 62
62
C
412 428Right-handed alpha
Helix 63
63
C
440 448Right-handed alpha
Helix 64
64
C
461 468Right-handed alpha
Helix 65
65
C
469 471Right-handed 310
Helix 66
66
C
484 499Right-handed alpha
Helix 67
67
D
40 46Right-handed alpha
Helix 68
68
D
49 54Right-handed alpha
Helix 69
69
D
65 69Right-handed 310
Helix 70
70
D
70 81Right-handed alpha
Helix 71
71
D
93 111Right-handed alpha
Helix 72
72
D
132 136Right-handed 310
Helix 73
73
D
167 172Right-handed alpha
Helix 74
74
D
226 236Right-handed alpha
Helix 75
75
D
252 264Right-handed alpha
Helix 76
76
D
278 284Right-handed alpha
Helix 77
77
D
284 292Right-handed alpha
Helix 78
78
D
299 303Right-handed alpha
Helix 79
79
D
307 325Right-handed alpha
Helix 80
80
D
336 341Right-handed 310
Helix 81
81
D
346 360Right-handed alpha
Helix 82
82
D
367 372Right-handed alpha
Helix 83
83
D
375 391Right-handed alpha
Helix 84
84
D
395 407Right-handed alpha
Helix 85
85
D
412 429Right-handed alpha
Helix 86
86
D
440 448Right-handed alpha
Helix 87
87
D
461 468Right-handed alpha
Helix 88
88
D
469 471Right-handed 310
Helix 89
89
D
484 497Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 3GG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
82 88parallel
Strand 3
A
117 121parallel
Strand 4
A
244 247parallel
Strand 5
A
271 276parallel
Strand 6
A
295 298parallel
Strand 7
A
329 332parallel
Strand 8
A
363 366parallel
Strand 9
A
59 63parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
145 149parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
185 192anti-parallel
Strand 5
A
177 180anti-parallel
Strand 6
A
213 214anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 478first strand
Strand 2
A
455 459parallel
Strand 3
A
432 436parallel
Strand 4
A
507 513parallel
Strand 5
A
523 529anti-parallel
Strand 6
D
523 529anti-parallel
Strand 7
D
507 512anti-parallel
Strand 8
D
432 436parallel
Strand 9
D
455 459parallel
Strand 10
D
474 478parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
84 88parallel
Strand 3
B
117 121parallel
Strand 4
B
244 247parallel
Strand 5
B
271 276parallel
Strand 6
B
295 297parallel
Strand 7
B
329 331parallel
Strand 8
B
363 366parallel
Strand 9
B
59 63parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
146 149parallel
Strand 3
B
196 201anti-parallel
Strand 4
B
185 192anti-parallel
Strand 5
B
177 180anti-parallel
Strand 6
B
213 214anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 478first strand
Strand 2
B
455 459parallel
Strand 3
B
432 436parallel
Strand 4
B
507 512parallel
Strand 5
B
523 529anti-parallel
Strand 6
C
522 529anti-parallel
Strand 7
C
507 514anti-parallel
Strand 8
C
432 436parallel
Strand 9
C
455 459parallel
Strand 10
C
474 478parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
82 88parallel
Strand 3
C
117 121parallel
Strand 4
C
244 247parallel
Strand 5
C
271 276parallel
Strand 6
C
295 298parallel
Strand 7
C
329 332parallel
Strand 8
C
363 366parallel
Strand 9
C
59 63parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 140first strand
Strand 2
C
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
145 149parallel
Strand 3
C
196 201anti-parallel
Strand 4
C
185 192anti-parallel
Strand 5
C
177 180anti-parallel
Strand 6
C
213 214anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
82 88parallel
Strand 3
D
117 121parallel
Strand 4
D
244 247parallel
Strand 5
D
271 276parallel
Strand 6
D
295 298parallel
Strand 7
D
329 332parallel
Strand 8
D
363 366parallel
Strand 9
D
59 63parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 140first strand
Strand 2
D
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 162first strand
Strand 2
D
145 149parallel
Strand 3
D
196 201anti-parallel
Strand 4
D
185 192anti-parallel
Strand 5
D
177 180anti-parallel
Strand 6
D
213 214anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il