Analysis of interatomic Contacts of Structural Units in PDB entry:
3GG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GG9 entry

There are 4 chains in PDB entry 3GG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ARG 352
B
 SER 11ARG 352
C
 SER 11ARG 352
D
 SER 11ARG 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 3GG9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed 310
Helix 2
2
A
47 55Right-handed alpha
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
99 107Right-handed alpha
Helix 5
5
A
117 133Right-handed alpha
Helix 6
6
A
134 144Right-handed alpha
Helix 7
7
A
178 191Right-handed alpha
Helix 8
8
A
200 210Right-handed alpha
Helix 9
9
A
217 225Right-handed alpha
Helix 10
10
A
243 248Right-handed alpha
Helix 11
11
A
261 265Right-handed 310
Helix 12
12
A
268 277Right-handed alpha
Helix 13
13
A
296 301Right-handed 310
Helix 14
14
A
314 334Right-handed alpha
Helix 15
15
A
342 346Right-handed 310
Helix 16
16
B
23 34Right-handed 310
Helix 17
17
B
47 56Right-handed alpha
Helix 18
18
B
71 76Right-handed alpha
Helix 19
19
B
99 107Right-handed alpha
Helix 20
20
B
117 133Right-handed alpha
Helix 21
21
B
134 144Right-handed alpha
Helix 22
22
B
178 191Right-handed alpha
Helix 23
23
B
200 210Right-handed alpha
Helix 24
24
B
217 225Right-handed alpha
Helix 25
25
B
243 248Right-handed alpha
Helix 26
26
B
261 265Right-handed 310
Helix 27
27
B
268 276Right-handed alpha
Helix 28
28
B
296 301Right-handed alpha
Helix 29
29
B
314 334Right-handed alpha
Helix 30
30
B
342 347Right-handed 310
Helix 31
31
C
23 34Right-handed 310
Helix 32
32
C
47 55Right-handed alpha
Helix 33
33
C
71 76Right-handed alpha
Helix 34
34
C
99 106Right-handed alpha
Helix 35
35
C
117 133Right-handed alpha
Helix 36
36
C
134 144Right-handed alpha
Helix 37
37
C
178 191Right-handed alpha
Helix 38
38
C
200 210Right-handed alpha
Helix 39
39
C
217 225Right-handed alpha
Helix 40
40
C
243 248Right-handed alpha
Helix 41
41
C
261 265Right-handed 310
Helix 42
42
C
268 277Right-handed alpha
Helix 43
43
C
314 333Right-handed alpha
Helix 44
44
C
342 347Right-handed 310
Helix 45
45
D
23 34Right-handed 310
Helix 46
46
D
47 55Right-handed alpha
Helix 47
47
D
71 76Right-handed alpha
Helix 48
48
D
99 106Right-handed alpha
Helix 49
49
D
117 133Right-handed alpha
Helix 50
50
D
134 144Right-handed alpha
Helix 51
51
D
178 191Right-handed alpha
Helix 52
52
D
200 210Right-handed alpha
Helix 53
53
D
217 225Right-handed alpha
Helix 54
54
D
243 248Right-handed alpha
Helix 55
55
D
261 265Right-handed 310
Helix 56
56
D
268 276Right-handed alpha
Helix 57
57
D
296 301Right-handed alpha
Helix 58
58
D
314 334Right-handed alpha
Helix 59
59
D
342 347Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3GG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
13 16parallel
Strand 3
A
60 63parallel
Strand 4
A
83 86parallel
Strand 5
A
109 111parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
194 198parallel
Strand 3
A
171 175parallel
Strand 4
A
227 230parallel
Strand 5
A
255 258parallel
Strand 6
A
281 284parallel
Strand 7
A
304 306parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
13 16parallel
Strand 3
B
60 63parallel
Strand 4
B
83 86parallel
Strand 5
B
109 111parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
194 198parallel
Strand 3
B
171 175parallel
Strand 4
B
227 230parallel
Strand 5
B
255 258parallel
Strand 6
B
281 284parallel
Strand 7
B
304 306parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
13 16parallel
Strand 3
C
60 63parallel
Strand 4
C
83 86parallel
Strand 5
C
109 111parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 214first strand
Strand 2
C
194 198parallel
Strand 3
C
171 175parallel
Strand 4
C
227 230parallel
Strand 5
C
255 258parallel
Strand 6
C
281 284parallel
Strand 7
C
304 306parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 40first strand
Strand 2
D
13 16parallel
Strand 3
D
60 63parallel
Strand 4
D
83 86parallel
Strand 5
D
109 111parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 214first strand
Strand 2
D
194 198parallel
Strand 3
D
171 175parallel
Strand 4
D
227 230parallel
Strand 5
D
255 258parallel
Strand 6
D
281 284parallel
Strand 7
D
304 306parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il