Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GGF entry

There are 2 chains in PDB entry 3GGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 17SER 300
B
 ALA 18GLU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3GGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed alpha
Helix 2
2
A
62 75Right-handed alpha
Helix 3
3
A
107 112Right-handed alpha
Helix 4
4
A
117 133Right-handed alpha
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
187 192Right-handed alpha
Helix 7
7
A
198 215Right-handed alpha
Helix 8
8
A
223 234Right-handed alpha
Helix 9
9
A
244 255Right-handed alpha
Helix 10
10
A
258 262Right-handed 310
Helix 11
11
A
264 270Right-handed alpha
Helix 12
12
A
271 278Right-handed alpha
Helix 13
13
A
280 283Right-handed 310
Helix 14
14
A
284 297Right-handed alpha
Helix 15
15
B
19 23Right-handed alpha
Helix 16
16
B
62 75Right-handed alpha
Helix 17
17
B
107 112Right-handed alpha
Helix 18
18
B
117 133Right-handed alpha
Helix 19
19
B
146 148Right-handed 310
Helix 20
20
B
187 192Right-handed alpha
Helix 21
21
B
198 215Right-handed alpha
Helix 22
22
B
223 231Right-handed alpha
Helix 23
23
B
244 255Right-handed alpha
Helix 24
24
B
258 262Right-handed 310
Helix 25
25
B
264 269Right-handed alpha
Helix 26
26
B
271 278Right-handed alpha
Helix 27
27
B
280 283Right-handed 310
Helix 28
28
B
284 297Right-handed alpha
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There are 6 sheets in PDB entry 3GGF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 32first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
94 100anti-parallel
Strand 5
A
85 91anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
150 152anti-parallel
Strand 3
A
158 160anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
164 165anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 32first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
94 99anti-parallel
Strand 5
B
85 91anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
150 152anti-parallel
Strand 3
B
158 160anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
164 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il