Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GGG entry

There are 4 chains in PDB entry 3GGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 18ILE 310
A
 LYS 26ILE 310
B
 MET 18ARG 307
C
 LEU 25ILE 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3GGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
21 29Right-handed alpha
Helix 2
2
D
39 52Right-handed alpha
Helix 3
3
D
64 74Right-handed alpha
Helix 4
4
D
83 91Right-handed 310
Helix 5
5
D
100 102Right-handed 310
Helix 6
6
D
103 115Right-handed alpha
Helix 7
7
D
129 140Right-handed alpha
Helix 8
8
D
156 160Right-handed 310
Helix 9
9
D
179 193Right-handed alpha
Helix 10
10
D
201 213Right-handed alpha
Helix 11
11
D
213 231Right-handed alpha
Helix 12
12
D
236 244Right-handed 310
Helix 13
13
D
245 254Right-handed 310
Helix 14
14
D
255 266Right-handed alpha
Helix 15
15
D
266 290Right-handed alpha
Helix 16
16
D
292 310Right-handed alpha
Helix 17
17
A
39 51Right-handed alpha
Helix 18
18
A
64 74Right-handed alpha
Helix 19
19
A
83 91Right-handed 310
Helix 20
20
A
100 102Right-handed 310
Helix 21
21
A
103 115Right-handed alpha
Helix 22
22
A
129 140Right-handed alpha
Helix 23
23
A
141 143Right-handed 310
Helix 24
24
A
156 160Right-handed 310
Helix 25
25
A
179 193Right-handed alpha
Helix 26
26
A
201 213Right-handed alpha
Helix 27
27
A
213 231Right-handed alpha
Helix 28
28
A
236 244Right-handed 310
Helix 29
29
A
245 254Right-handed 310
Helix 30
30
A
255 266Right-handed alpha
Helix 31
31
A
266 290Right-handed alpha
Helix 32
32
A
292 310Right-handed alpha
Helix 33
33
B
18 29Right-handed alpha
Helix 34
34
B
39 52Right-handed alpha
Helix 35
35
B
64 74Right-handed alpha
Helix 36
36
B
86 91Right-handed alpha
Helix 37
37
B
100 102Right-handed 310
Helix 38
38
B
103 115Right-handed alpha
Helix 39
39
B
129 140Right-handed alpha
Helix 40
40
B
156 160Right-handed 310
Helix 41
41
B
179 193Right-handed alpha
Helix 42
42
B
201 213Right-handed alpha
Helix 43
43
B
213 231Right-handed alpha
Helix 44
44
B
236 240Right-handed 310
Helix 45
45
B
244 249Right-handed alpha
Helix 46
46
B
250 254Right-handed 310
Helix 47
47
B
255 266Right-handed alpha
Helix 48
48
B
266 290Right-handed alpha
Helix 49
49
B
292 302Right-handed alpha
Helix 50
50
B
303 305Right-handed 310
Helix 51
51
C
26 30Right-handed 310
Helix 52
52
C
39 52Right-handed alpha
Helix 53
53
C
64 74Right-handed alpha
Helix 54
54
C
83 91Right-handed 310
Helix 55
55
C
100 102Right-handed 310
Helix 56
56
C
103 115Right-handed alpha
Helix 57
57
C
129 140Right-handed alpha
Helix 58
58
C
156 160Right-handed 310
Helix 59
59
C
179 193Right-handed alpha
Helix 60
60
C
201 213Right-handed alpha
Helix 61
61
C
213 231Right-handed alpha
Helix 62
62
C
236 240Right-handed 310
Helix 63
63
C
244 249Right-handed alpha
Helix 64
64
C
250 254Right-handed 310
Helix 65
65
C
255 266Right-handed alpha
Helix 66
66
C
266 291Right-handed alpha
Helix 67
67
C
292 301Right-handed alpha
Helix 68
68
C
302 304Right-handed 310
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There are 8 sheets in PDB entry 3GGG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 81first strand
Strand 2
D
57 61parallel
Strand 3
D
32 36parallel
Strand 4
D
94 97parallel
Strand 5
D
120 123parallel
Strand 6
D
143 144parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 148first strand
Strand 2
D
169 172anti-parallel
Strand 3
D
196 199parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
57 61parallel
Strand 3
A
32 36parallel
Strand 4
A
94 97parallel
Strand 5
A
120 123parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
169 173anti-parallel
Strand 3
A
196 199parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
57 61parallel
Strand 3
B
32 36parallel
Strand 4
B
94 97parallel
Strand 5
B
120 123parallel
Strand 6
B
143 144parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
196 199parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
57 61parallel
Strand 3
C
32 36parallel
Strand 4
C
94 97parallel
Strand 5
C
120 123parallel
Strand 6
C
143 144parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 148first strand
Strand 2
C
169 172anti-parallel
Strand 3
C
196 199parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il