Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GGP entry

There are 4 chains in PDB entry 3GGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 26	ASP 311
B	LYS 26	GLU 309
C	LEU 25	ILE 310
D	LYS 26	ASP 311

There are 65 helices in PDB entry 3GGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	39	52	Right-handed alpha
Helix 2	2	A	64	74	Right-handed alpha
Helix 3	3	A	84	91	Right-handed 310
Helix 4	4	A	100	102	Right-handed 310
Helix 5	5	A	103	115	Right-handed alpha
Helix 6	6	A	129	140	Right-handed alpha
Helix 7	7	A	156	160	Right-handed 310
Helix 8	8	A	179	193	Right-handed alpha
Helix 9	9	A	201	213	Right-handed alpha
Helix 10	10	A	213	231	Right-handed alpha
Helix 11	11	A	236	240	Right-handed 310
Helix 12	12	A	245	254	Right-handed 310
Helix 13	13	A	255	266	Right-handed alpha
Helix 14	14	A	266	291	Right-handed alpha
Helix 15	15	A	293	310	Right-handed alpha
Helix 16	16	B	39	52	Right-handed alpha
Helix 17	17	B	64	74	Right-handed alpha
Helix 18	18	B	83	91	Right-handed 310
Helix 19	19	B	100	102	Right-handed 310
Helix 20	20	B	103	113	Right-handed alpha
Helix 21	21	B	129	140	Right-handed alpha
Helix 22	22	B	156	160	Right-handed 310
Helix 23	23	B	179	193	Right-handed alpha
Helix 24	24	B	201	213	Right-handed alpha
Helix 25	25	B	213	231	Right-handed alpha
Helix 26	26	B	236	240	Right-handed 310
Helix 27	27	B	244	250	Right-handed alpha
Helix 28	28	B	251	254	Right-handed 310
Helix 29	29	B	255	266	Right-handed alpha
Helix 30	30	B	266	290	Right-handed alpha
Helix 31	31	B	292	301	Right-handed alpha
Helix 32	32	B	302	309	Right-handed 310
Helix 33	33	C	25	29	Right-handed 310
Helix 34	34	C	39	52	Right-handed alpha
Helix 35	35	C	64	74	Right-handed alpha
Helix 36	36	C	86	91	Right-handed alpha
Helix 37	37	C	100	102	Right-handed 310
Helix 38	38	C	103	115	Right-handed alpha
Helix 39	39	C	129	140	Right-handed alpha
Helix 40	40	C	156	160	Right-handed 310
Helix 41	41	C	179	193	Right-handed alpha
Helix 42	42	C	201	213	Right-handed alpha
Helix 43	43	C	213	231	Right-handed alpha
Helix 44	44	C	236	240	Right-handed 310
Helix 45	45	C	244	249	Right-handed alpha
Helix 46	46	C	250	254	Right-handed 310
Helix 47	47	C	255	266	Right-handed alpha
Helix 48	48	C	266	290	Right-handed alpha
Helix 49	49	C	292	301	Right-handed alpha
Helix 50	50	C	302	309	Right-handed 310
Helix 51	51	D	39	52	Right-handed alpha
Helix 52	52	D	64	74	Right-handed alpha
Helix 53	53	D	86	91	Right-handed alpha
Helix 54	54	D	100	102	Right-handed 310
Helix 55	55	D	103	113	Right-handed alpha
Helix 56	56	D	128	140	Right-handed alpha
Helix 57	57	D	156	160	Right-handed 310
Helix 58	58	D	179	193	Right-handed alpha
Helix 59	59	D	201	213	Right-handed alpha
Helix 60	60	D	213	231	Right-handed alpha
Helix 61	61	D	236	244	Right-handed 310
Helix 62	62	D	245	254	Right-handed 310
Helix 63	63	D	255	266	Right-handed alpha
Helix 64	64	D	266	290	Right-handed alpha
Helix 65	65	D	292	310	Right-handed alpha

There are 8 sheets in PDB entry 3GGP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	57	61	parallel
Strand 3	A	32	36	parallel
Strand 4	A	94	97	parallel
Strand 5	A	120	123	parallel
Strand 6	A	143	144	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	196	199	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	57	61	parallel
Strand 3	B	32	36	parallel
Strand 4	B	94	97	parallel
Strand 5	B	120	123	parallel
Strand 6	B	143	144	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	196	199	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	57	61	parallel
Strand 3	C	32	36	parallel
Strand 4	C	94	97	parallel
Strand 5	C	120	123	parallel
Strand 6	C	143	144	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	196	199	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	57	61	parallel
Strand 3	D	32	36	parallel
Strand 4	D	94	97	parallel
Strand 5	D	120	123	parallel
Strand 6	D	143	144	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	169	172	anti-parallel
Strand 3	D	196	199	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGP