Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GGR entry

There are 3 chains in PDB entry 3GGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 265
B
 PHE 3SER 280
C
 ASP 13GLU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3GGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 21Right-handed alpha
Helix 2
2
A
55 58Right-handed 310
Helix 3
3
A
77 85Right-handed alpha
Helix 4
4
A
149 157Right-handed alpha
Helix 5
5
A
218 228Right-handed alpha
Helix 6
6
B
11 25Right-handed alpha
Helix 7
7
B
84 93Right-handed alpha
Helix 8
8
B
142 147Right-handed alpha
Helix 9
9
B
164 177Right-handed alpha
Helix 10
10
B
235 242Right-handed alpha
Helix 11
11
C
24 33Right-handed alpha
Helix 12
12
C
68 70Right-handed 310
Helix 13
13
C
86 91Right-handed alpha
Helix 14
14
C
159 167Right-handed alpha
Helix 15
15
C
225 236Right-handed alpha
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There are 8 sheets in PDB entry 3GGR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
3 6anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
108 113anti-parallel
Strand 5
A
118 123anti-parallel
Strand 6
C
197 202anti-parallel
Strand 7
C
189 194anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
26 30anti-parallel
Strand 3
A
36 39anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
256 262anti-parallel
Strand 6
A
247 252anti-parallel
Strand 7
A
234 239anti-parallel
Strand 8
A
143 148anti-parallel
Strand 9
A
206 207anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
168 170anti-parallel
Strand 3
A
177 180anti-parallel
Strand 4
A
195 199anti-parallel
Strand 5
B
128 132anti-parallel
Strand 6
B
113 119anti-parallel
Strand 7
B
100 105anti-parallel
Strand 8
B
4 8anti-parallel
Strand 9
B
67 69anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
79 83anti-parallel
Strand 3
B
31 34anti-parallel
Strand 4
B
40 43anti-parallel
Strand 5
B
54 58anti-parallel
Strand 6
B
270 275anti-parallel
Strand 7
B
260 267anti-parallel
Strand 8
B
255 256anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
180 184anti-parallel
Strand 3
B
190 195anti-parallel
Strand 4
B
199 204anti-parallel
Strand 5
C
129 137anti-parallel
Strand 6
C
116 124anti-parallel
Strand 7
C
105 111anti-parallel
Strand 8
C
17 20anti-parallel
Strand 9
C
72 75anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 85first strand
Strand 2
C
39 45anti-parallel
Strand 3
C
48 54anti-parallel
Strand 4
C
60 66anti-parallel
Strand 5
C
265 271anti-parallel
Strand 6
C
252 256anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 214first strand
Strand 2
C
155 157anti-parallel
Strand 3
C
241 243anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 179first strand
Strand 2
C
219 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il