Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GGV entry

There are 9 chains in PDB entry 3GGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 1PHE 99
A
 PRO 1PHE 99
C
 PRO 1PHE 99
D
 PRO 1PHE 99
E
 PRO 1PHE 99
F
 PRO 1PHE 99
G
 PRO 1PHE 99
H
 PRO 1PHE 99
I
 PRO 1PHE 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3GGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
86 93Right-handed alpha
Helix 2
2
A
86 91Right-handed alpha
Helix 3
3
A
92 94Right-handed 310
Helix 4
4
C
86 93Right-handed alpha
Helix 5
5
D
86 91Right-handed alpha
Helix 6
6
E
86 91Right-handed alpha
Helix 7
7
F
86 91Right-handed alpha
Helix 8
8
G
86 91Right-handed alpha
Helix 9
9
G
92 94Right-handed 310
Helix 10
10
H
86 91Right-handed alpha
Helix 11
11
H
92 94Right-handed 310
Helix 12
12
I
86 91Right-handed alpha
Helix 13
13
I
92 94Right-handed 310
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There are 15 sheets in PDB entry 3GGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
A
96 98anti-parallel
Strand 3
B
96 98anti-parallel
Strand 4
A
2 4anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
54 66anti-parallel
Strand 3
B
69 77anti-parallel
Strand 4
B
32 33parallel
Strand 5
B
84 85anti-parallel
Strand 6
B
18 24parallel
Strand 7
B
10 15anti-parallel
Strand 8
B
54 66anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
54 66anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
31 33parallel
Strand 5
A
84 85anti-parallel
Strand 6
A
18 24parallel
Strand 7
A
10 15anti-parallel
Strand 8
A
54 66anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
D
96 98anti-parallel
Strand 3
C
96 98anti-parallel
Strand 4
D
2 3anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
54 66anti-parallel
Strand 3
C
69 77anti-parallel
Strand 4
C
31 33parallel
Strand 5
C
84 85anti-parallel
Strand 6
C
19 24parallel
Strand 7
C
10 14anti-parallel
Strand 8
C
54 66anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 47first strand
Strand 2
D
54 66anti-parallel
Strand 3
D
69 78anti-parallel
Strand 4
D
32 34parallel
Strand 5
D
84 85anti-parallel
Strand 6
D
18 24parallel
Strand 7
D
10 15anti-parallel
Strand 8
D
54 66anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 3first strand
Strand 2
F
96 98anti-parallel
Strand 3
E
96 98anti-parallel
Strand 4
F
2 4anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 66first strand
Strand 2
E
10 14anti-parallel
Strand 3
E
19 24anti-parallel
Strand 4
E
83 85parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 33first strand
Strand 2
E
72 77parallel
Strand 3
E
54 63anti-parallel
Strand 4
E
43 47anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 47first strand
Strand 2
F
54 66anti-parallel
Strand 3
F
70 77anti-parallel
Strand 4
F
32 33parallel
Strand 5
F
84 85anti-parallel
Strand 6
F
18 24parallel
Strand 7
F
10 15anti-parallel
Strand 8
F
54 66anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
2 3first strand
Strand 2
H
96 98anti-parallel
Strand 3
G
96 98anti-parallel
Strand 4
H
2 3anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
31 34first strand
Strand 2
G
69 78parallel
Strand 3
G
54 66anti-parallel
Strand 4
G
43 47anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
31 34first strand
Strand 2
G
69 78parallel
Strand 3
G
54 66anti-parallel
Strand 4
G
10 15anti-parallel
Strand 5
G
18 24anti-parallel
Strand 6
G
84 85parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
43 47first strand
Strand 2
H
54 66anti-parallel
Strand 3
H
69 78anti-parallel
Strand 4
H
31 34parallel
Strand 5
H
83 85anti-parallel
Strand 6
H
18 24parallel
Strand 7
H
10 15anti-parallel
Strand 8
H
54 66anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
43 48first strand
Strand 2
I
53 66anti-parallel
Strand 3
I
69 77anti-parallel
Strand 4
I
31 33parallel
Strand 5
I
84 85anti-parallel
Strand 6
I
18 24parallel
Strand 7
I
10 15anti-parallel
Strand 8
I
53 66anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il