Analysis of interatomic Contacts of Structural Units in PDB entry:
3GH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GH8 entry

There are 8 chains in PDB entry 3GH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 66	HIS 286
B	SER 66	VAL 285
C	SER 66	HIS 286
D	VAL 67	HIS 286
E	SER 66	HIS 286
F	SER 66	VAL 285
G	SER 66	HIS 286
H	VAL 67	HIS 286

There are 76 helices in PDB entry 3GH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	78	94	Right-handed alpha
Helix 2	2	A	108	120	Right-handed alpha
Helix 3	3	A	124	128	Right-handed 310
Helix 4	4	A	138	159	Right-handed alpha
Helix 5	5	A	162	170	Right-handed alpha
Helix 6	6	A	171	173	Right-handed 310
Helix 7	7	A	179	184	Right-handed alpha
Helix 8	8	A	208	227	Right-handed alpha
Helix 9	9	A	239	247	Right-handed alpha
Helix 10	10	A	277	280	Right-handed 310
Helix 11	11	B	78	95	Right-handed alpha
Helix 12	12	B	108	120	Right-handed alpha
Helix 13	13	B	124	128	Right-handed 310
Helix 14	14	B	138	159	Right-handed alpha
Helix 15	15	B	162	169	Right-handed alpha
Helix 16	16	B	170	173	Right-handed 310
Helix 17	17	B	179	184	Right-handed alpha
Helix 18	18	B	208	227	Right-handed alpha
Helix 19	19	B	239	247	Right-handed alpha
Helix 20	20	B	277	280	Right-handed 310
Helix 21	21	C	78	95	Right-handed alpha
Helix 22	22	C	108	120	Right-handed alpha
Helix 23	23	C	124	128	Right-handed 310
Helix 24	24	C	138	159	Right-handed alpha
Helix 25	25	C	162	170	Right-handed alpha
Helix 26	26	C	171	173	Right-handed 310
Helix 27	27	C	179	184	Right-handed alpha
Helix 28	28	C	208	227	Right-handed alpha
Helix 29	29	C	239	248	Right-handed alpha
Helix 30	30	C	277	280	Right-handed 310
Helix 31	31	D	78	95	Right-handed alpha
Helix 32	32	D	108	120	Right-handed alpha
Helix 33	33	D	138	159	Right-handed alpha
Helix 34	34	D	162	169	Right-handed alpha
Helix 35	35	D	170	173	Right-handed 310
Helix 36	36	D	179	184	Right-handed alpha
Helix 37	37	D	208	228	Right-handed alpha
Helix 38	38	D	239	247	Right-handed alpha
Helix 39	39	D	277	281	Right-handed alpha
Helix 40	40	E	78	94	Right-handed alpha
Helix 41	41	E	108	121	Right-handed alpha
Helix 42	42	E	124	128	Right-handed 310
Helix 43	43	E	138	159	Right-handed alpha
Helix 44	44	E	162	170	Right-handed alpha
Helix 45	45	E	171	173	Right-handed 310
Helix 46	46	E	179	184	Right-handed alpha
Helix 47	47	E	208	228	Right-handed alpha
Helix 48	48	E	239	247	Right-handed alpha
Helix 49	49	E	277	280	Right-handed 310
Helix 50	50	F	78	95	Right-handed alpha
Helix 51	51	F	108	120	Right-handed alpha
Helix 52	52	F	124	128	Right-handed 310
Helix 53	53	F	138	160	Right-handed alpha
Helix 54	54	F	161	169	Right-handed alpha
Helix 55	55	F	170	173	Right-handed 310
Helix 56	56	F	179	184	Right-handed alpha
Helix 57	57	F	208	227	Right-handed alpha
Helix 58	58	F	239	247	Right-handed alpha
Helix 59	59	F	277	280	Right-handed 310
Helix 60	60	G	78	96	Right-handed alpha
Helix 61	61	G	108	120	Right-handed alpha
Helix 62	62	G	138	159	Right-handed alpha
Helix 63	63	G	162	169	Right-handed alpha
Helix 64	64	G	179	184	Right-handed alpha
Helix 65	65	G	208	228	Right-handed alpha
Helix 66	66	G	239	248	Right-handed alpha
Helix 67	67	G	277	281	Right-handed alpha
Helix 68	68	H	78	95	Right-handed alpha
Helix 69	69	H	108	120	Right-handed alpha
Helix 70	70	H	138	159	Right-handed alpha
Helix 71	71	H	162	169	Right-handed alpha
Helix 72	72	H	170	173	Right-handed 310
Helix 73	73	H	179	184	Right-handed alpha
Helix 74	74	H	208	228	Right-handed alpha
Helix 75	75	H	239	247	Right-handed alpha
Helix 76	76	H	277	281	Right-handed alpha

There are 24 sheets in PDB entry 3GH8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	B	269	271	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	261	first strand
Strand 2	A	186	193	anti-parallel
Strand 3	A	131	136	anti-parallel
Strand 4	B	282	285	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	203	204	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	B	69	71	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	B	131	136	parallel
Strand 3	B	186	193	anti-parallel
Strand 4	B	253	261	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	203	205	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	71	first strand
Strand 2	D	269	271	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	253	264	anti-parallel
Strand 3	C	230	231	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	253	264	anti-parallel
Strand 3	C	186	193	anti-parallel
Strand 4	C	131	136	anti-parallel
Strand 5	D	282	285	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	203	205	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	271	first strand
Strand 2	D	69	71	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	285	first strand
Strand 2	D	131	136	parallel
Strand 3	D	186	193	anti-parallel
Strand 4	D	253	262	anti-parallel
Strand 5	D	230	231	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	203	205	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	261	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	131	136	anti-parallel
Strand 4	F	282	285	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	197	first strand
Strand 2	E	203	204	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	271	first strand
Strand 2	F	69	71	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	284	first strand
Strand 2	F	131	136	parallel
Strand 3	F	186	193	anti-parallel
Strand 4	F	253	261	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	197	first strand
Strand 2	F	203	205	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	71	first strand
Strand 2	H	269	271	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	253	261	first strand
Strand 2	G	186	193	anti-parallel
Strand 3	G	131	136	anti-parallel
Strand 4	H	282	284	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	197	first strand
Strand 2	G	203	205	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	H	69	71	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	284	first strand
Strand 2	H	131	136	parallel
Strand 3	H	186	193	anti-parallel
Strand 4	H	253	261	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	197	first strand
Strand 2	H	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GH8