Analysis of interatomic Contacts of Structural Units in PDB entry:
3GHG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GHG entry

There are 20 chains in PDB entry 3GHG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	GLN 200
B	LYS 58	PHE 458
C	ARG 14	ILE 394
D	ALA 27	GLN 200
E	LYS 58	PHE 458
F	ARG 14	GLY 395
G	ALA 27	GLN 200
H	LYS 58	PHE 458
I	VAL 2	GLY 395
J	ALA 27	ASP 212
K	LYS 58	PHE 458
L	ARG 5	GLY 395
M	GLY 1	PRO 4
N	GLY 1	PRO 4
O	GLY 1	PRO 4
P	GLY 1	PRO 4
Q	GLY 1	PRO 4
R	GLY 1	PRO 4
S	GLY 1	PRO 4
T	GLY 1	PRO 4

There are118 helices in PDB entry 3GHG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	47	74	Right-handed alpha
Helix 2	2	A	74	93	Right-handed alpha
Helix 3	3	A	96	111	Right-handed alpha
Helix 4	4	A	112	161	Right-handed alpha
Helix 5	5	A	162	164	Right-handed 310
Helix 6	6	A	174	190	Right-handed alpha
Helix 7	7	B	78	116	Right-handed alpha
Helix 8	8	B	116	138	Right-handed alpha
Helix 9	9	B	141	151	Right-handed alpha
Helix 10	10	B	151	159	Right-handed alpha
Helix 11	11	B	159	193	Right-handed alpha
Helix 12	12	B	210	217	Right-handed alpha
Helix 13	13	B	265	271	Right-handed alpha
Helix 14	14	B	295	305	Right-handed alpha
Helix 15	15	B	333	337	Right-handed 310
Helix 16	16	B	361	366	Right-handed alpha
Helix 17	17	B	393	398	Right-handed alpha
Helix 18	18	B	423	427	Right-handed 310
Helix 19	19	B	437	442	Right-handed alpha
Helix 20	20	C	22	69	Right-handed alpha
Helix 21	21	C	78	133	Right-handed alpha
Helix 22	22	C	152	159	Right-handed alpha
Helix 23	23	C	207	214	Right-handed alpha
Helix 24	24	C	229	238	Right-handed alpha
Helix 25	25	C	269	273	Right-handed 310
Helix 26	26	C	288	292	Right-handed 310
Helix 27	27	C	300	305	Right-handed alpha
Helix 28	28	C	325	331	Right-handed alpha
Helix 29	29	C	390	392	Right-handed 310
Helix 30	30	D	47	78	Right-handed alpha
Helix 31	31	D	79	93	Right-handed alpha
Helix 32	32	D	98	104	Right-handed alpha
Helix 33	33	D	104	110	Right-handed alpha
Helix 34	34	D	116	160	Right-handed alpha
Helix 35	35	D	174	190	Right-handed alpha
Helix 36	36	E	78	87	Right-handed alpha
Helix 37	37	E	89	96	Right-handed alpha
Helix 38	38	E	97	103	Right-handed alpha
Helix 39	39	E	105	115	Right-handed alpha
Helix 40	40	E	117	139	Right-handed alpha
Helix 41	41	E	142	187	Right-handed alpha
Helix 42	42	E	187	192	Right-handed alpha
Helix 43	43	E	210	217	Right-handed alpha
Helix 44	44	E	243	247	Right-handed 310
Helix 45	45	E	265	271	Right-handed alpha
Helix 46	46	E	295	304	Right-handed alpha
Helix 47	47	E	333	337	Right-handed 310
Helix 48	48	E	361	367	Right-handed alpha
Helix 49	49	E	393	399	Right-handed alpha
Helix 50	50	F	21	31	Right-handed alpha
Helix 51	51	F	36	67	Right-handed alpha
Helix 52	52	F	85	98	Right-handed alpha
Helix 53	53	F	99	104	Right-handed alpha
Helix 54	54	F	104	134	Right-handed alpha
Helix 55	55	F	152	160	Right-handed alpha
Helix 56	56	F	207	214	Right-handed alpha
Helix 57	57	F	229	238	Right-handed alpha
Helix 58	58	F	269	273	Right-handed 310
Helix 59	59	F	300	305	Right-handed alpha
Helix 60	60	F	325	331	Right-handed alpha
Helix 61	61	F	389	395	Right-handed alpha
Helix 62	62	G	47	160	Right-handed alpha
Helix 63	63	G	174	189	Right-handed alpha
Helix 64	64	H	78	88	Right-handed alpha
Helix 65	65	H	89	103	Right-handed alpha
Helix 66	66	H	108	115	Right-handed alpha
Helix 67	67	H	117	122	Right-handed alpha
Helix 68	68	H	123	151	Right-handed alpha
Helix 69	69	H	154	159	Right-handed alpha
Helix 70	70	H	160	192	Right-handed alpha
Helix 71	71	H	210	218	Right-handed alpha
Helix 72	72	H	243	247	Right-handed 310
Helix 73	73	H	265	272	Right-handed alpha
Helix 74	74	H	295	306	Right-handed alpha
Helix 75	75	H	361	367	Right-handed alpha
Helix 76	76	H	393	398	Right-handed alpha
Helix 77	77	H	438	442	Right-handed alpha
Helix 78	78	I	4	8	Right-handed 310
Helix 79	79	I	21	38	Right-handed alpha
Helix 80	80	I	39	66	Right-handed alpha
Helix 81	81	I	77	121	Right-handed alpha
Helix 82	82	I	122	133	Right-handed alpha
Helix 83	83	I	152	160	Right-handed alpha
Helix 84	84	I	207	214	Right-handed alpha
Helix 85	85	I	229	238	Right-handed alpha
Helix 86	86	I	269	273	Right-handed 310
Helix 87	87	I	288	292	Right-handed 310
Helix 88	88	I	298	305	Right-handed 310
Helix 89	89	I	325	330	Right-handed alpha
Helix 90	90	I	389	395	Right-handed alpha
Helix 91	91	J	47	160	Right-handed alpha
Helix 92	92	J	174	190	Right-handed alpha
Helix 93	93	K	78	89	Right-handed alpha
Helix 94	94	K	90	93	Right-handed 310
Helix 95	95	K	94	105	Right-handed alpha
Helix 96	96	K	108	115	Right-handed alpha
Helix 97	97	K	116	160	Right-handed alpha
Helix 98	98	K	160	193	Right-handed alpha
Helix 99	99	K	210	217	Right-handed alpha
Helix 100	100	K	243	247	Right-handed 310
Helix 101	101	K	265	271	Right-handed alpha
Helix 102	102	K	296	304	Right-handed alpha
Helix 103	103	K	333	337	Right-handed 310
Helix 104	104	K	361	366	Right-handed alpha
Helix 105	105	K	393	399	Right-handed alpha
Helix 106	106	K	437	442	Right-handed alpha
Helix 107	107	L	21	69	Right-handed alpha
Helix 108	108	L	78	91	Right-handed alpha
Helix 109	109	L	93	103	Right-handed alpha
Helix 110	110	L	106	135	Right-handed alpha
Helix 111	111	L	152	160	Right-handed alpha
Helix 112	112	L	207	214	Right-handed alpha
Helix 113	113	L	229	239	Right-handed alpha
Helix 114	114	L	269	273	Right-handed 310
Helix 115	115	L	288	292	Right-handed 310
Helix 116	116	L	300	305	Right-handed alpha
Helix 117	117	L	325	331	Right-handed alpha
Helix 118	118	L	389	395	Right-handed alpha

There are 34 sheets in PDB entry 3GHG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	E	75	77	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	D	44	45	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	C	140	141	parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	C	215	218	anti-parallel
Strand 3	C	226	227	anti-parallel
Strand 4	C	190	197	anti-parallel
Strand 5	C	381	388	anti-parallel
Strand 6	C	244	251	anti-parallel
Strand 7	C	259	267	anti-parallel
Strand 8	C	276	277	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	178	184	anti-parallel
Strand 3	C	190	197	anti-parallel
Strand 4	C	381	388	anti-parallel
Strand 5	C	244	251	anti-parallel
Strand 6	C	259	267	anti-parallel
Strand 7	C	280	283	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	224	227	parallel
Strand 3	B	236	241	anti-parallel
Strand 4	B	249	255	anti-parallel
Strand 5	B	292	294	anti-parallel
Strand 6	B	272	274	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	224	227	parallel
Strand 3	B	236	241	anti-parallel
Strand 4	B	249	255	anti-parallel
Strand 5	B	450	456	anti-parallel
Strand 6	B	308	314	anti-parallel
Strand 7	B	322	331	anti-parallel
Strand 8	B	340	346	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	288	289	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	F	18	20	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	333	334	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	368	369	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	199	first strand
Strand 2	F	140	141	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	227	first strand
Strand 2	E	236	240	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	274	first strand
Strand 2	E	292	294	anti-parallel
Strand 3	E	250	255	anti-parallel
Strand 4	E	449	456	anti-parallel
Strand 5	E	308	315	anti-parallel
Strand 6	E	321	331	anti-parallel
Strand 7	E	340	347	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	411	first strand
Strand 2	E	436	437	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	169	first strand
Strand 2	F	178	183	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	381	388	anti-parallel
Strand 5	F	244	251	anti-parallel
Strand 6	F	257	259	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	216	first strand
Strand 2	F	226	227	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	381	388	anti-parallel
Strand 5	F	244	251	anti-parallel
Strand 6	F	262	267	anti-parallel
Strand 7	F	276	277	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	K	74	77	anti-parallel
Strand 3	K	65	66	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	77	first strand
Strand 2	J	44	45	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	199	first strand
Strand 2	I	140	141	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	223	227	first strand
Strand 2	H	236	241	anti-parallel
Strand 3	H	249	255	anti-parallel
Strand 4	H	292	293	anti-parallel
Strand 5	H	273	274	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	223	227	first strand
Strand 2	H	236	241	anti-parallel
Strand 3	H	249	255	anti-parallel
Strand 4	H	449	456	anti-parallel
Strand 5	H	308	315	anti-parallel
Strand 6	H	321	329	anti-parallel
Strand 7	H	342	347	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	410	411	first strand
Strand 2	H	436	437	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	20	first strand
Strand 2	L	18	20	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	165	169	parallel
Strand 3	I	178	183	anti-parallel
Strand 4	I	191	197	anti-parallel
Strand 5	I	226	227	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	165	169	parallel
Strand 3	I	178	183	anti-parallel
Strand 4	I	191	197	anti-parallel
Strand 5	I	381	388	anti-parallel
Strand 6	I	244	251	anti-parallel
Strand 7	I	259	267	anti-parallel
Strand 8	I	276	277	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	198	199	first strand
Strand 2	L	140	141	parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	203	204	first strand
Strand 2	L	215	218	anti-parallel
Strand 3	L	226	227	anti-parallel
Strand 4	L	190	197	anti-parallel
Strand 5	L	381	386	anti-parallel
Strand 6	L	244	251	anti-parallel
Strand 7	L	257	267	anti-parallel
Strand 8	L	276	277	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	150	first strand
Strand 2	L	165	169	parallel
Strand 3	L	178	184	anti-parallel
Strand 4	L	190	197	anti-parallel
Strand 5	L	381	386	anti-parallel
Strand 6	L	244	251	anti-parallel
Strand 7	L	257	267	anti-parallel
Strand 8	L	280	283	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	223	227	parallel
Strand 3	K	236	241	anti-parallel
Strand 4	K	249	255	anti-parallel
Strand 5	K	292	294	anti-parallel
Strand 6	K	272	274	anti-parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	223	227	parallel
Strand 3	K	236	241	anti-parallel
Strand 4	K	249	255	anti-parallel
Strand 5	K	449	456	anti-parallel
Strand 6	K	308	315	anti-parallel
Strand 7	K	321	331	anti-parallel
Strand 8	K	340	346	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	374	376	first strand
Strand 2	K	402	404	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	311	313	first strand
Strand 2	L	334	336	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	342	343	first strand
Strand 2	L	368	369	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GHG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GHG