Analysis of interatomic Contacts of Structural Units in PDB entry:
3GHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GHH entry

There are 2 chains in PDB entry 3GHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 40ARG 277
B
 LEU 39LEU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3GHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 66Right-handed alpha
Helix 2
2
A
74 87Right-handed alpha
Helix 3
3
A
95 98Right-handed 310
Helix 4
4
A
99 106Right-handed alpha
Helix 5
5
A
121 133Right-handed alpha
Helix 6
6
A
140 147Right-handed alpha
Helix 7
7
A
175 192Right-handed alpha
Helix 8
8
A
212 217Right-handed alpha
Helix 9
9
A
218 222Right-handed 310
Helix 10
10
A
246 259Right-handed alpha
Helix 11
11
A
271 277Right-handed alpha
Helix 12
12
B
50 66Right-handed alpha
Helix 13
13
B
74 87Right-handed alpha
Helix 14
14
B
95 98Right-handed 310
Helix 15
15
B
99 106Right-handed alpha
Helix 16
16
B
121 133Right-handed alpha
Helix 17
17
B
136 139Right-handed 310
Helix 18
18
B
140 147Right-handed alpha
Helix 19
19
B
175 191Right-handed alpha
Helix 20
20
B
212 217Right-handed alpha
Helix 21
21
B
218 222Right-handed 310
Helix 22
22
B
246 257Right-handed alpha
Helix 23
23
B
270 275Right-handed alpha
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There are 4 sheets in PDB entry 3GHH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
164 165anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
115 119parallel
Strand 3
A
195 201parallel
Strand 4
A
227 234parallel
Strand 5
A
262 270parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
164 165anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
195 201parallel
Strand 3
B
227 233parallel
Strand 4
B
262 269parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il