Analysis of interatomic Contacts of Structural Units in PDB entry:
3GI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GI0 entry

There are 15 chains in PDB entry 3GI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1GLU 35
A
 ASN 37GLY 40
A
 TRP 42LYS 45
A
 ILE 47ILE 66
A
 GLY 68GLY 94
A
 THR 96PHE 99
A
 GLY 101GLU 139
A
 ASN 141GLY 144
A
 TRP 146LYS 149
A
 ILE 151ILE 154
A
 GLY 156ILE 170
A
 GLY 172GLY 198
A
 THR 200PHE 203
C
 SER 2ASN 4
C
 ILE 6ILE 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3GI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 91Right-handed alpha
Helix 2
2
A
100 103Right-handed 310
Helix 3
3
A
190 195Right-handed alpha
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There are 3 sheets in PDB entry 3GI0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
200 202anti-parallel
Strand 3
A
96 98anti-parallel
Strand 4
A
106 107anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 49first strand
Strand 2
A
52 66anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
32 33parallel
Strand 5
A
84 85anti-parallel
Strand 6
A
18 24parallel
Strand 7
A
10 15anti-parallel
Strand 8
A
52 66anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 153first strand
Strand 2
A
156 170anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
136 137parallel
Strand 5
A
188 189anti-parallel
Strand 6
A
122 128parallel
Strand 7
A
114 119anti-parallel
Strand 8
A
156 170anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il