Analysis of interatomic Contacts of Structural Units in PDB entry:
3GI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GI1 entry

There are 2 chains in PDB entry 3GI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 30LYS 306
B
 GLY 32LYS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3GI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 51Right-handed alpha
Helix 2
2
A
71 80Right-handed alpha
Helix 3
3
A
92 96Right-handed 310
Helix 4
4
A
142 145Right-handed 310
Helix 5
5
A
146 165Right-handed alpha
Helix 6
6
A
168 195Right-handed alpha
Helix 7
7
A
209 216Right-handed alpha
Helix 8
8
A
233 247Right-handed alpha
Helix 9
9
A
260 269Right-handed alpha
Helix 10
10
A
289 306Right-handed alpha
Helix 11
11
B
39 51Right-handed alpha
Helix 12
12
B
71 80Right-handed alpha
Helix 13
13
B
92 96Right-handed 310
Helix 14
14
B
142 145Right-handed 310
Helix 15
15
B
146 165Right-handed alpha
Helix 16
16
B
168 194Right-handed alpha
Helix 17
17
B
209 216Right-handed alpha
Helix 18
18
B
233 247Right-handed alpha
Helix 19
19
B
260 271Right-handed alpha
Helix 20
20
B
289 306Right-handed alpha
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There are 4 sheets in PDB entry 3GI1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
34 37parallel
Strand 3
A
83 86parallel
Strand 4
A
108 111parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
201 206parallel
Strand 3
A
251 254parallel
Strand 4
A
273 276parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
34 37parallel
Strand 3
B
83 86parallel
Strand 4
B
108 111parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 224first strand
Strand 2
B
201 206parallel
Strand 3
B
251 254parallel
Strand 4
B
273 276parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il