Analysis of interatomic Contacts of Structural Units in PDB entry:
3GID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GID entry

There are 2 chains in PDB entry 3GID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 241ASP 750
B
 ASP 241ASN 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 3GID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 254Right-handed alpha
Helix 2
2
A
268 288Right-handed alpha
Helix 3
3
A
300 307Right-handed alpha
Helix 4
4
A
309 314Right-handed alpha
Helix 5
5
A
324 328Right-handed 310
Helix 6
6
A
331 342Right-handed alpha
Helix 7
7
A
358 367Right-handed alpha
Helix 8
8
A
375 383Right-handed alpha
Helix 9
9
A
384 395Right-handed alpha
Helix 10
10
A
436 448Right-handed alpha
Helix 11
11
A
472 484Right-handed alpha
Helix 12
12
A
540 559Right-handed alpha
Helix 13
13
A
588 597Right-handed alpha
Helix 14
14
A
599 609Right-handed alpha
Helix 15
15
A
612 615Right-handed 310
Helix 16
16
A
616 623Right-handed alpha
Helix 17
17
A
709 725Right-handed alpha
Helix 18
18
A
731 743Right-handed alpha
Helix 19
19
A
743 748Right-handed alpha
Helix 20
20
B
246 254Right-handed alpha
Helix 21
21
B
268 288Right-handed alpha
Helix 22
22
B
300 307Right-handed alpha
Helix 23
23
B
308 314Right-handed alpha
Helix 24
24
B
324 328Right-handed 310
Helix 25
25
B
331 342Right-handed alpha
Helix 26
26
B
358 367Right-handed alpha
Helix 27
27
B
375 382Right-handed alpha
Helix 28
28
B
384 395Right-handed alpha
Helix 29
29
B
436 448Right-handed alpha
Helix 30
30
B
472 484Right-handed alpha
Helix 31
31
B
540 558Right-handed alpha
Helix 32
32
B
589 597Right-handed alpha
Helix 33
33
B
599 609Right-handed alpha
Helix 34
34
B
612 615Right-handed 310
Helix 35
35
B
616 623Right-handed alpha
Helix 36
36
B
709 725Right-handed alpha
Helix 37
37
B
731 743Right-handed alpha
Helix 38
38
B
743 749Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3GID. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
294 299parallel
Strand 3
A
262 265parallel
Strand 4
A
346 348parallel
Strand 5
A
370 371parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 467first strand
Strand 2
A
451 455anti-parallel
Strand 3
A
489 493anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 582first strand
Strand 2
A
562 570anti-parallel
Strand 3
A
499 507anti-parallel
Strand 4
A
513 523anti-parallel
Strand 5
A
531 534anti-parallel
Strand 6
A
647 653anti-parallel
Strand 7
A
700 707anti-parallel
Strand 8
A
680 686anti-parallel
Strand 9
A
668 673anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
294 299parallel
Strand 3
B
262 265parallel
Strand 4
B
346 348parallel
Strand 5
B
370 371parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 467first strand
Strand 2
B
451 455anti-parallel
Strand 3
B
489 493anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 582first strand
Strand 2
B
562 570anti-parallel
Strand 3
B
499 507anti-parallel
Strand 4
B
513 523anti-parallel
Strand 5
B
531 534anti-parallel
Strand 6
B
647 653anti-parallel
Strand 7
B
700 707anti-parallel
Strand 8
B
680 686anti-parallel
Strand 9
B
668 673anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il