Analysis of interatomic Contacts of Structural Units in PDB entry:
3GIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GIF entry

There are 2 chains in PDB entry 3GIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 155ASN 368
B
 GLU 165MET 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3GIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
156 190Right-handed alpha
Helix 2
2
A
190 208Right-handed alpha
Helix 3
3
A
212 243Right-handed alpha
Helix 4
4
A
245 260Right-handed alpha
Helix 5
5
A
276 298Right-handed alpha
Helix 6
6
A
335 347Right-handed alpha
Helix 7
7
B
165 209Right-handed alpha
Helix 8
8
B
212 238Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3GIF.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
302 309parallel
Strand 3
A
313 320anti-parallel
Strand 4
A
359 366anti-parallel
Strand 5
A
353 354anti-parallel
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