Analysis of interatomic Contacts of Structural Units in PDB entry:
3GIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GIG entry

There are 3 chains in PDB entry 3GIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 155ASN 368
B
 LEU 164LEU 187
B
 ASP 189ASN 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3GIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
155 212Right-handed alpha
Helix 2
2
A
212 236Right-handed alpha
Helix 3
3
A
245 259Right-handed alpha
Helix 4
4
A
276 298Right-handed alpha
Helix 5
5
A
332 332Right-handed alpha
Helix 6
6
A
335 347Right-handed alpha
Helix 7
7
B
164 212Right-handed alpha
Helix 8
8
B
212 241Right-handed alpha
Helix 9
9
B
243 259Right-handed alpha
Helix 10
10
B
276 298Right-handed alpha
Helix 11
11
B
335 347Right-handed alpha
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There are 2 sheets in PDB entry 3GIG. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
302 310parallel
Strand 3
A
313 320anti-parallel
Strand 4
A
359 366anti-parallel
Strand 5
A
350 354anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
302 310parallel
Strand 3
B
313 320anti-parallel
Strand 4
B
359 366anti-parallel
Strand 5
B
350 354anti-parallel
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