Analysis of interatomic Contacts of Structural Units in PDB entry:
3GIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GIN entry

There are 2 chains in PDB entry 3GIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 370HIS 501
B
 PRO 370HIS 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3GIN

There are 4 sheets in PDB entry 3GIN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 443first strand
Strand 2
A
389 397anti-parallel
Strand 3
A
371 376anti-parallel
Strand 4
A
483 486parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
491 497parallel
Strand 3
A
454 464anti-parallel
Strand 4
A
405 413anti-parallel
Strand 5
A
426 431anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 443first strand
Strand 2
B
389 397anti-parallel
Strand 3
B
372 376anti-parallel
Strand 4
B
484 486parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 384first strand
Strand 2
B
491 497parallel
Strand 3
B
454 466anti-parallel
Strand 4
B
404 413anti-parallel
Strand 5
B
426 431anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il